Package: wnpp Severity: wishlist Owner: Charles Plessy <ple...@debian.org>
Hello everybody, I intend to package Phyml, as it is necessary for upgrading SeaView to version 4.0. As usual, the source of the PDF manual was omitted from the Upstream tarball. I am working on this issue. Have a nice day, -- Charles Source: phyml Section: science Priority: optional Maintainer: Debian-Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> DM-Upload-Allowed: yes Uploaders: Charles Plessy <ple...@debian.org> Build-Depends: debhelper (>= 7), automake, autoconf Standards-Version: 3.8.0 Homepage: http://www.atgc-montpellier.fr/phyml Package: phyml Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends} Description: Phylogenetic estimation using Maximum Likelihood PhyML is a software that estimates maximum likelihood phylogenies from alignments of nucleotide or amino acid sequences. It provides a wide range of options that were designed to facilitate standard phylogenetic analyses. The main strengths of PhyML lies in the large number of substitution models coupled to various options to search the space of phylogenetic tree topologies, going from very fast and efficient methods to slower but generally more accurate approaches. It also implements two methods to evaluate branch supports in a sound statistical framework (the non-parametric bootstrap and the approximate likelihood ratio test). . PhyML was designed to process moderate to large data sets. In theory, alignments with up to 4,000 sequences 2,000,000 character-long can analyzed. In practice however, the amount of memory required to process a data set is proportional of the product of the number of sequences by their length. Hence, a large number of sequences can only be processed provided that they are short. Also, PhyML can handle long sequences provided that they are not numerous. With most standard personal computers, the “comfort zone” for PhyML generally lies around 3 to 500 sequences less than 2,000 character long. Upstream-Name: PhyML Upstream-Maintainer: Stephane Guindon <guin...@stat.auckland.ac.nz> Department of Statistics. University of Auckland. New Zealand Universite Montpellier II - CNRS UMR 5506. LIRMM. Montpellier France. . Olivier Gascuel <gasc...@lirmm.fr> Universite Montpellier II - CNRS UMR 5506. LIRMM. Montpellier France. . Jean-Francois Dufayard <jeanfrancois.dufay...@gmail.com> Universite Montpellier II - CNRS UMR 5506. LIRMM. Montpellier France. Upstream-Source: http://phyml.googlecode.com/files/phyml_3December2008.tar.gz Files: * Copyright: Stephane Guindon <guin...@stat.auckland.ac.nz> Olivier Gascuel <gasc...@lirmm.fr> Jean-Francois Dufayard <jeanfrancois.dufay...@gmail.com> Wim Hodrijk <w...@santafe.edu> Franck Lethiec <leth...@lirmm.fr> Licence: GPL-2+ -- To UNSUBSCRIBE, email to debian-devel-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
