Package: wnpp Severity: wishlist Owner: Charles Plessy <[EMAIL PROTECTED]>
Package name : dialign-t Version : 0.2.2 Upstream Author : Amarendran R. Subramanian <subraman[nospam_AT]informatik[dot]uni[dash]tuebingen[dot]de> URL : http://dialign-t.gobics.de/ License : LGPL Programming Lang: C Description : Segment-based multiple sequence alignment DIALIGN-T is a command line tool to perform multiple alignment of protein or DNA sequences. It is a complete reimplementation of the segment-base approach including several new improvements and heuristics that significantly enhance the quality of the output alignments compared to DIALIGN 2.2. For pairwise alignment, DIALIGN-T uses a fragment-chaining algorithm that favours chains of low-scoring local alignments over isolated high-scoring fragments. For multiple alignment, DIALIGN-T uses an improved greedy procedure that is less sensitive to spurious local sequence similarities. DIALIGN-T has been published in Amarendran R. Subramanian, Jan Weyer-Menkhoff, Michael Kaufmann, Burkhard Morgenstern: DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment. BMC Bioinformatics 2005, 6:66. DIALIGN-T is needed by dm_coffee, a special mode of t_coffee prepared especially for Debian, in which non-free alignment software was replaced by free alternatives. -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]