Package: wnpp Severity: wishlist Owner: Charles Plessy <[EMAIL PROTECTED]>
Package name : ssaha Version : 3.3 Upstream Author : Anthony J. Cox <[EMAIL PROTECTED]> URL : http://groups.yahoo.com/group/ssahausers/files/ssaha_v33.tar.gz License : GPL Programming Lang: C++ Description : Sequence Search and Alignment by Hashing Algorithm SSAHA is a software tool for very fast matching and alignment of DNA sequences. It achieves its fast search speed by converting sequence information into a `hash table' data structure, which can then be searched very rapidly for matches. It was published by Ning Z, Cox AJ, Mullikin JC in Genome Res. 2001;11;1725-9. . Homepage: http://www.sanger.ac.uk/Software/analysis/SSAHA/ SSAHA is the only free software of its category (fast search of nearly indentical sequences). The popular alternative, BLAT, is restricted to non-commercial use. Only version 3.3 can be build with gcc 4.1 ; it was released on the SSAHA users mailing list, hence the strange URL. I will first finish the work on two other ITPs (mirbase, mafft) before undertaking this one. Do not hesitate to hijack it if you want to get things done faster ! -- System Information: Debian Release: 4.0 APT prefers testing APT policy: (500, 'testing'), (500, 'stable'), (1, 'experimental') Architecture: powerpc (ppc64) Shell: /bin/sh linked to /bin/bash Kernel: Linux 2.6.18-4-powerpc64 Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8) -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]
