Package: wnpp Severity: wishlist
* Package name : tigr-glimmerhmm Version : 2.0.2 Upstream Author : Mihaela Pertea <[EMAIL PROTECTED]> * URL : http://www.tigr.org/software/glimmer/ * License : Artistic Description : [Biology] gene finder for eukaryotic genomes GlimmerHMM is a new gene finder based on a Generalized Hidden Markov Model (GHMM). Although the gene finder conforms to the overall mathematical framework of a GHMM, additionally it incorporates splice site models adapted from the GeneSplicer program and a decision tree adapted from GlimmerM. It also utilizes Interpolated Markov Models for the coding and noncoding models . Currently, GlimmerHMM's GHMM structure includes introns of each phase, intergenic regions, and four types of exons (initial, internal, final, and single). . GlimmerHMM has been trained on several species including Arabidopsis thaliana, Coccidioides species, Cryptococcus neoformans, and Brugia malayi. . Homepage: http://www.tigr.org/software/GlimmerHMM/ A package is a available at http://bioinformatics.pzr.uni-rostock.de/~moeller/debian/tigr-glimmerhmm/ Cheers, Steffen Moeller -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]
