Your message dated Sun, 02 Aug 2026 22:48:58 +0000
with message-id <[email protected]>
and subject line Bug#1143375: fixed in r-bioc-basilisk 1.24.0+dfsg-1
has caused the Debian Bug report #1143375,
regarding r-bioc-basilisk: FTBFS: dh_auto_install: error: R CMD INSTALL -l
/<<BUILDDIR>>/r-bioc-basilisk-1.18.0\+ds/debian/r-bioc-basilisk/usr/lib/R/site-library
--clean . --built-timestamp="'Fri, 13 Mar 2026 10:49:14 +0900'" returned exit
code 1
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1143375: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1143375
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:r-bioc-basilisk
Version: 1.18.0+ds-3
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202608/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:r-bioc-basilisk, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary
dh binary --buildsystem R
dh_update_autotools_config -O--buildsystem=R
dh_autoreconf -O--buildsystem=R
dh_auto_configure -O--buildsystem=R
dh_auto_build -O--buildsystem=R
dh_auto_test -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=R
dh_prep -O--buildsystem=R
dh_auto_install --destdir=debian/r-bioc-basilisk/ -O--buildsystem=R
I: R Package: basilisk Version: 1.18.0
I: Building using R version 4.6.1-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Fri, 13 Mar 2026 10:49:14 +0900
mkdir -p
/<<BUILDDIR>>/r-bioc-basilisk-1.18.0\+ds/debian/r-bioc-basilisk/usr/lib/R/site-library
R CMD INSTALL -l
/<<BUILDDIR>>/r-bioc-basilisk-1.18.0\+ds/debian/r-bioc-basilisk/usr/lib/R/site-library
--clean . --built-timestamp="'Fri, 13 Mar 2026 10:49:14 +0900'"
* installing *source* package âbasiliskâ ...
** this is package âbasiliskâ version â1.18.0â
file âinst/doc/motivation.htmlâ is missing
file âtests/testthat/test-install.Râ has the wrong MD5 checksum
** using non-staged installation via StagedInstall field
Error: 'useSystemDir' is not an exported object from 'namespace:basilisk.utils'
Execution halted
ERROR: configuration failed for package âbasiliskâ
* removing
â/<<PKGBUILDDIR>>/debian/r-bioc-basilisk/usr/lib/R/site-library/basiliskâ
dh_auto_install: error: R CMD INSTALL -l
/<<BUILDDIR>>/r-bioc-basilisk-1.18.0\+ds/debian/r-bioc-basilisk/usr/lib/R/site-library
--clean . --built-timestamp="'Fri, 13 Mar 2026 10:49:14 +0900'" returned exit
code 1
make: *** [debian/rules:4: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit
status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Source: r-bioc-basilisk
Source-Version: 1.24.0+dfsg-1
Done: Charles Plessy <[email protected]>
We believe that the bug you reported is fixed in the latest version of
r-bioc-basilisk, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <[email protected]> (supplier of updated r-bioc-basilisk package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 03 Aug 2026 07:14:50 +0900
Source: r-bioc-basilisk
Architecture: source
Version: 1.24.0+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <[email protected]>
Changed-By: Charles Plessy <[email protected]>
Closes: 1143375
Changes:
r-bioc-basilisk (1.24.0+dfsg-1) unstable; urgency=medium
.
* Team upload.
* New upstream version. Closes: #1143375
* Use uscan v5 $template template. (routine-update)
* Standards-Version: 4.7.4 (routine-update)
* Remove old patch.
* Remove skip-not-installable in d/t/autopkgtest-pkg-r.conf (routine-
update)
* Restrict to R packages team core architectures (routine-update)
* Drop 'Rules-Requires-Root: no' from d/control (routine-update)
* Set upstream metadata fields: Repository, Repository-Browse.
Checksums-Sha1:
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r-bioc-basilisk_1.24.0+dfsg.orig.tar.xz
a0caf62800036af815380a2d709ae8bf0b60d993 3112
r-bioc-basilisk_1.24.0+dfsg-1.debian.tar.xz
c02d5483b811e6acdb7ef60b34f539a1c8e6af10 12072
r-bioc-basilisk_1.24.0+dfsg-1_amd64.buildinfo
Checksums-Sha256:
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r-bioc-basilisk_1.24.0+dfsg-1.dsc
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r-bioc-basilisk_1.24.0+dfsg.orig.tar.xz
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r-bioc-basilisk_1.24.0+dfsg-1.debian.tar.xz
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r-bioc-basilisk_1.24.0+dfsg-1_amd64.buildinfo
Files:
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r-bioc-basilisk_1.24.0+dfsg-1.dsc
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r-bioc-basilisk_1.24.0+dfsg.orig.tar.xz
b542e36d482989ef913adfd8059ef86b 3112 gnu-r optional
r-bioc-basilisk_1.24.0+dfsg-1.debian.tar.xz
6cf6e380ef55437a5bebb38591f5dcb8 12072 gnu-r optional
r-bioc-basilisk_1.24.0+dfsg-1_amd64.buildinfo
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