Bug#1139518: marked as done (orange-spectroscopy: FTBFS: failing tests)

Mon, 27 Jul 2026 15:21:29 -0700 

Your message dated Mon, 27 Jul 2026 22:18:46 +0000
with message-id <[email protected]>
and subject line Bug#1135060: fixed in orange-spectroscopy 0.9.3-1
has caused the Debian Bug report #1135060,
regarding orange-spectroscopy: FTBFS: failing tests
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
1135060: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1135060
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message --- 
Package: src:orange-spectroscopy
Version: 0.9.2-1
Severity: serious
Tags: ftbfs forky sid

Dear maintainer:

During a rebuild of all packages in unstable, this package failed to build.

Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:

https://people.debian.org/~sanvila/build-logs/202606/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:orange-spectroscopy, so that this is still
visible in the BTS web page for this package.

Thanks.

--------------------------------------------------------------------------------
[...]
 debian/rules clean
dh clean --with sphinxdoc --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary
dh binary --with sphinxdoc --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   dh_auto_configure -O--buildsystem=pybuild
   dh_auto_build -O--buildsystem=pybuild
I: pybuild plugin_pyproject:142: Building wheel for python3.14 with "build" 
module
I: pybuild base:385: python3.14 -m build --skip-dependency-check --no-isolation 
--wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_orange-spectroscopy  
* Building wheel...
/usr/lib/python3/dist-packages/setuptools/config/setupcfg.py:294: 
_DeprecatedConfig: Deprecated config in `setup.cfg`

[... snipped ...]

  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/utils/__init__.py:70:
 RuntimeWarning: invalid value encountered in cast
    return np.round(positions).astype(int), np.isnan(positions)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py:
 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py: 6 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/owhyper.py:793:
 RuntimeWarning: Mean of empty slice
    cols[int(i / bin_sz), int(j / bin_sz)] = np.nanmean(

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py:
 16 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py: 16 
warnings
  /usr/lib/python3/dist-packages/lmfit/jsonutils.py:30: DeprecationWarning: 
Please import `gaussian` from the `scipy.signal.windows` namespace; the 
`scipy.signal.windows.windows` namespace is deprecated and will be removed in 
SciPy 2.0.0.
    t = getattr(module, oname, None)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py:
 34 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpolar.py:
 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py: 34 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpolar.py: 10 
warnings
  /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: 
This process (pid=2663) is multi-threaded, use of fork() may lead to deadlocks 
in the child.
    self.pid = os.fork()

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py:
 18 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py: 18 
warnings
  /usr/lib/python3/dist-packages/uncertainties/core.py:526: FutureWarning: 
AffineScalarFunc.error_components() is currently an instance method. This 
method is deprecated. In a future release it will be replaced with an instance 
property by the same name. It will be accessed by 
AffineScalarFunc.error_components (with no parentheses).
    return float(sqrt(sum(delta**2 for delta in 
self.error_components().values())))

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py:
 18 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py: 18 
warnings
  /usr/lib/python3/dist-packages/uncertainties/core.py:491: FutureWarning: 
AffineScalarFunc.derivatives() is deprecated. It will be removed in a future 
release.
    for variable, derivative in self.derivatives.items():

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py::TestOWPeakFit::test_allint_indv
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py::TestOWPeakFit::test_allint_indv
  /usr/lib/python3/dist-packages/asteval/asteval.py:922: RuntimeWarning: 
overflow encountered in exp
    out = func(*args, **keywords)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py::TestOWPeakFit::test_allint_indv
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py::TestOWPeakFit::test_allint_indv
  /usr/lib/python3/dist-packages/asteval/astutils.py:263: RuntimeWarning: 
invalid value encountered in scalar subtract
    ast.Sub: lambda a, b: a - b,

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpls.py:
 22 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpls.py: 22 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/models/pls.py:47:
 UserWarning: _PLSCommonTransform should define __eq__ and __hash__ to be used 
for compute_shared
    super().__init__(transform)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpls.py:
 22 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpls.py: 22 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/models/pls.py:83:
 UserWarning: PLSProjector should define __eq__ and __hash__ to be used for 
compute_value
  or set InheritEq = True if inherited methods suffice
    return ContinuousVariable(name, compute_value=PLSProjector(transformer, i))

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpls.py:
 20 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpls.py: 20 
warnings
  /usr/lib/python3/dist-packages/orangewidget/gui.py:2070: UserWarning: 
decorate OWPLS.apply with @gui.deferred and then explicitly call apply.now or 
apply.deferred.
    warnings.warn(

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpolar.py:
 13 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpolar.py: 13 
warnings
  /usr/lib/python3/dist-packages/orangewidget/utils/listview.py:119: 
DeprecationWarning: ListViewSearch is deprecated and will be removed in 
upcoming releases. Use ListViewFilter instead.
    warnings.warn(("ListViewSearch is deprecated and will be removed " + "in 
upcoming releases. Use ListViewFilter instead."),

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 11 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 6 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 11 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:50:
 UserWarning: _PCAReconstructCommon should define __eq__ and __hash__ to be 
used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
 7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 7 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 10 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:50:
 UserWarning: _ShiftAndScaleCommon should define __eq__ and __hash__ to be used 
for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 6 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 6 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:50:
 UserWarning: _MNFCommon should define __eq__ and __hash__ to be used for 
compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
 7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py:
 21 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 7 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py: 21 warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:50:
 UserWarning: _XASnormalizationCommon should define __eq__ and __hash__ to be 
used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py:
 4 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py:
 11 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 4 
warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py: 11 warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:50:
 UserWarning: _ExtractEXAFSCommon should define __eq__ and __hash__ to be used 
for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py::TestAllPreprocessors::test_allpreproc_indv_empty
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestPCADenoising::test_no_samples
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestMNFDenoising::test_no_samples
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py::TestAllPreprocessors::test_allpreproc_indv_empty
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestPCADenoising::test_no_samples
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestMNFDenoising::test_no_samples
  /usr/lib/python3/dist-packages/Orange/data/table.py:219: UserWarning: <class 
'numpy.ndarray'> must return a column, not 2d array
    warnings.warn(err)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py::TestAllPreprocessors::test_allpreproc_indv_empty
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py::TestAllPreprocessors::test_allpreproc_indv_empty
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/preprocessors/atm_corr.py:153:
 RuntimeWarning: All-NaN slice encountered
    self.preview_data_max = np.nanmax(spectra_mean(data.X))

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owsnr.py::TestOWSNR::test_zero_size_data
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owsnr.py::TestOWSNR::test_zero_size_data
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/owsnr.py:124:
 RuntimeWarning: divide by zero encountered in divide
    bottleneck.nanmean(array, axis=0) / bottleneck.nanstd(array, axis=0)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owsnr.py::TestOWSNR::test_zero_size_data
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owsnr.py::TestOWSNR::test_zero_size_data
  /usr/lib/python3/dist-packages/Orange/data/table.py:2472: RuntimeWarning: 
Array contains infinity.
    warnings.warn("Array contains infinity.", RuntimeWarning)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owspectralseries.py:
 15 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owspectralseries.py:
 15 warnings
  /usr/lib/python3/dist-packages/Orange/widgets/gui.py:483: DeprecationWarning: 
Argument 'valueType' is deprecated and ignored
    warnings.warn("Argument 'valueType' is deprecated and ignored",

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 52 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 52 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:50:
 UserWarning: _SpSubtractCommon should define __eq__ and __hash__ to be used 
for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 5 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 5 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:101:
 RuntimeWarning: divide by zero encountered in divide
    transd = data.X / ref_X

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestTransmittance::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestTransmittance::test_no_infs
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:101:
 RuntimeWarning: invalid value encountered in divide
    transd = data.X / ref_X

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 5 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 5 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:37:
 RuntimeWarning: divide by zero encountered in log10
    np.log10(absd, absd)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestAbsorbance::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestAbsorbance::test_no_infs
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:42:
 RuntimeWarning: divide by zero encountered in log10
    absd = np.log10(data.X)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 6 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:36:
 RuntimeWarning: divide by zero encountered in divide
    absd = ref_X / data.X

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestAbsorbance::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestAbsorbance::test_no_infs
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:36:
 RuntimeWarning: invalid value encountered in divide
    absd = ref_X / data.X

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestNormalize::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestNormalize::test_no_infs
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:446:
 RuntimeWarning: invalid value encountered in divide
    data.X /= norm_data.X

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestNormalize::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestNormalize::test_no_infs
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:466:
 RuntimeWarning: invalid value encountered in divide
    data.X = data.X / (max - min)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 5 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 5 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:521:
 RuntimeWarning: divide by zero encountered in divide
    return replace_infs(data.X / ref_X)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py:
 52 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 52 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:50:
 UserWarning: _NormalizePhaseReferenceCommon should define __eq__ and __hash__ 
to be used for compute_shared
    super().__init__(commonfn)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestNormalizeReference::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestNormalizeReference::test_no_infs
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:521:
 RuntimeWarning: invalid value encountered in divide
    return replace_infs(data.X / ref_X)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_readers.py::TestOmnicMapReader::test_read
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_readers.py::TestOmnicMapReader::test_read
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/utils/pymca5/OmnicMap.py:148:
 RuntimeWarning: invalid value encountered in scalar divide
    deltaY = (yPositions[-1] - yPositions[0]) / (self.__nFiles - 1)

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py:
 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 6 
warnings
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/owtilefile.py:139:
 DeprecationWarning: 'addSpace' has been deprecated. Use gui.separator instead.
    vbox = gui.radioButtons(

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py::TestXASnormalization::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py::TestXASnormalization::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py::TestXASnormalization::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py::TestXASnormalization::test_no_infs
  /usr/lib/python3/dist-packages/extranormal3/normal_xas.py:83: RuntimeWarning: 
invalid value encountered in divide
    return 
numpy.array((spectrum[1]-preedge_fitcurve[1]-flattening)/norm_const), norm_const

.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py::TestExtractEXAFS::test_file
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py::TestExtractEXAFS::test_file
  /usr/lib/python3/dist-packages/extranormal3/extra_exafs.py:96: 
RuntimeWarning: divide by zero encountered in divide
    sigma=1./k_interp**kweight

.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_irfft.py::TestIRFFT::test_agilent_fft_ab
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_irfft.py:105:
 RuntimeWarning: invalid value encountered in log10
    ab = np.log10(rsc / ssc)

.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_irfft.py::TestIRFFT::test_multi_ab
  
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_irfft.py:146:
 RuntimeWarning: invalid value encountered in log10
    ab = np.log10(rsc / ssc)

.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owalignstack.py::test_image
  /usr/lib/python3/dist-packages/_pytest/python.py:170: 
PytestReturnNotNoneWarning: Test functions should return None, but 
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owalignstack.py::test_image
 returned <class 'numpy.ndarray'>.
  Did you mean to use `assert` instead of `return`?
  See https://docs.pytest.org/en/stable/how-to/assert.html#return-not-none for 
more information.
    warnings.warn(

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
SUBFAILED[AtmCorr(reference=[[0.117, 0.119, 0.118, 0.119, 0.122, ... | collagen]
], correct_ranges=[(1300, 2100)], smooth_win=5)] 
orangecontrib/spectroscopy/tests/test_atm_corr.py::TestAtmCorr::test_all_nans - 
ValueError: array must not contain infs or NaNs
SUBFAILED[AtmCorr(reference=[[0.251, 0.306, 0.218, 0.119, 0.352, ... | collagen]
], correct_ranges=[(1300, 2100)], smooth_win=5)] 
orangecontrib/spectroscopy/tests/test_atm_corr.py::TestAtmCorr::test_all_nans - 
ValueError: array must not contain infs or NaNs
SUBFAILED[AtmCorr(reference=[[?, ?, ?, 0.119, 0.122, ... | ?]
], correct_ranges=[(1300, 2100)], smooth_win=5)] 
orangecontrib/spectroscopy/tests/test_atm_corr.py::TestAtmCorr::test_all_nans - 
ValueError: array must not contain infs or NaNs
SUBFAILED[AtmCorr(reference=[[0.251, 0.306, ?, 0.119, 0.352, ... | ?]
], correct_ranges=[(1300, 2100)], smooth_win=5)] 
orangecontrib/spectroscopy/tests/test_atm_corr.py::TestAtmCorr::test_all_nans - 
ValueError: array must not contain infs or NaNs
SUBFAILED[AtmCorr(reference=[[0.117, 0.119, 0.118, 0.119, 0.122, ... | collagen]
], correct_ranges=[(1300, 2100)], smooth_win=5)] 
orangecontrib/spectroscopy/tests/test_atm_corr.py::TestAtmCorr::test_all_nans - 
ValueError: array must not contain infs or NaNs
SUBFAILED[AtmCorr(reference=[[0.000, 0.119, 0.118, 0.119, 0.122, ... | collagen]
], correct_ranges=[(1300, 2100)], smooth_win=5)] 
orangecontrib/spectroscopy/tests/test_atm_corr.py::TestAtmCorr::test_all_nans - 
ValueError: array must not contain infs or NaNs
SUBFAILED[AtmCorr(reference=[[0.117, 0.119, 0.118, 0.119, 0.122, ... | collagen]
], correct_ranges=[(1300, 2100)], smooth_win=5)] 
orangecontrib/spectroscopy/tests/test_atm_corr.py::TestAtmCorr::test_no_infs - 
ValueError: array must not contain infs or NaNs
SUBFAILED[AtmCorr(reference=[[0.251, 0.306, 0.218, 0.119, 0.352, ... | collagen]
], correct_ranges=[(1300, 2100)], smooth_win=5)] 
orangecontrib/spectroscopy/tests/test_atm_corr.py::TestAtmCorr::test_no_infs - 
ValueError: array must not contain infs or NaNs
SUBFAILED[AtmCorr(reference=[[?, ?, ?, 0.119, 0.122, ... | ?]
], correct_ranges=[(1300, 2100)], smooth_win=5)] 
orangecontrib/spectroscopy/tests/test_atm_corr.py::TestAtmCorr::test_no_infs - 
ValueError: array must not contain infs or NaNs
SUBFAILED[AtmCorr(reference=[[0.251, 0.306, ?, 0.119, 0.352, ... | ?]
], correct_ranges=[(1300, 2100)], smooth_win=5)] 
orangecontrib/spectroscopy/tests/test_atm_corr.py::TestAtmCorr::test_no_infs - 
ValueError: array must not contain infs or NaNs
SUBFAILED[AtmCorr(reference=[[0.117, 0.119, 0.118, 0.119, 0.122, ... | collagen]
], correct_ranges=[(1300, 2100)], smooth_win=5)] 
orangecontrib/spectroscopy/tests/test_atm_corr.py::TestAtmCorr::test_no_infs - 
ValueError: array must not contain infs or NaNs
SUBFAILED[AtmCorr(reference=[[0.000, 0.119, 0.118, 0.119, 0.122, ... | collagen]
], correct_ranges=[(1300, 2100)], smooth_win=5)] 
orangecontrib/spectroscopy/tests/test_atm_corr.py::TestAtmCorr::test_no_infs - 
ValueError: array must not contain infs or NaNs
SUBFAILED[AtmCorr(reference=[[0.117, 0.119, 0.118, 0.119, 0.122, ... | collagen]
], correct_ranges=[(1300, 2100)], smooth_win=5)] 
tests/test_atm_corr.py::TestAtmCorr::test_all_nans - ValueError: array must not 
contain infs or NaNs
SUBFAILED[AtmCorr(reference=[[0.251, 0.306, 0.218, 0.119, 0.352, ... | collagen]
], correct_ranges=[(1300, 2100)], smooth_win=5)] 
tests/test_atm_corr.py::TestAtmCorr::test_all_nans - ValueError: array must not 
contain infs or NaNs
SUBFAILED[AtmCorr(reference=[[?, ?, ?, 0.119, 0.122, ... | ?]
], correct_ranges=[(1300, 2100)], smooth_win=5)] 
tests/test_atm_corr.py::TestAtmCorr::test_all_nans - ValueError: array must not 
contain infs or NaNs
SUBFAILED[AtmCorr(reference=[[0.251, 0.306, ?, 0.119, 0.352, ... | ?]
], correct_ranges=[(1300, 2100)], smooth_win=5)] 
tests/test_atm_corr.py::TestAtmCorr::test_all_nans - ValueError: array must not 
contain infs or NaNs
SUBFAILED[AtmCorr(reference=[[0.117, 0.119, 0.118, 0.119, 0.122, ... | collagen]
], correct_ranges=[(1300, 2100)], smooth_win=5)] 
tests/test_atm_corr.py::TestAtmCorr::test_all_nans - ValueError: array must not 
contain infs or NaNs
SUBFAILED[AtmCorr(reference=[[0.000, 0.119, 0.118, 0.119, 0.122, ... | collagen]
], correct_ranges=[(1300, 2100)], smooth_win=5)] 
tests/test_atm_corr.py::TestAtmCorr::test_all_nans - ValueError: array must not 
contain infs or NaNs
SUBFAILED[AtmCorr(reference=[[0.117, 0.119, 0.118, 0.119, 0.122, ... | collagen]
], correct_ranges=[(1300, 2100)], smooth_win=5)] 
tests/test_atm_corr.py::TestAtmCorr::test_no_infs - ValueError: array must not 
contain infs or NaNs
SUBFAILED[AtmCorr(reference=[[0.251, 0.306, 0.218, 0.119, 0.352, ... | collagen]
], correct_ranges=[(1300, 2100)], smooth_win=5)] 
tests/test_atm_corr.py::TestAtmCorr::test_no_infs - ValueError: array must not 
contain infs or NaNs
SUBFAILED[AtmCorr(reference=[[?, ?, ?, 0.119, 0.122, ... | ?]
], correct_ranges=[(1300, 2100)], smooth_win=5)] 
tests/test_atm_corr.py::TestAtmCorr::test_no_infs - ValueError: array must not 
contain infs or NaNs
SUBFAILED[AtmCorr(reference=[[0.251, 0.306, ?, 0.119, 0.352, ... | ?]
], correct_ranges=[(1300, 2100)], smooth_win=5)] 
tests/test_atm_corr.py::TestAtmCorr::test_no_infs - ValueError: array must not 
contain infs or NaNs
SUBFAILED[AtmCorr(reference=[[0.117, 0.119, 0.118, 0.119, 0.122, ... | collagen]
], correct_ranges=[(1300, 2100)], smooth_win=5)] 
tests/test_atm_corr.py::TestAtmCorr::test_no_infs - ValueError: array must not 
contain infs or NaNs
SUBFAILED[AtmCorr(reference=[[0.000, 0.119, 0.118, 0.119, 0.122, ... | collagen]
], correct_ranges=[(1300, 2100)], smooth_win=5)] 
tests/test_atm_corr.py::TestAtmCorr::test_no_infs - ValueError: array must not 
contain infs or NaNs
= 24 failed, 1652 passed, 462 skipped, 192 deselected, 1512 warnings, 2652 
subtests passed in 178.76s (0:02:58) =
Widgets left: 0    Max widgets: 9173 

E: pybuild pybuild:485: test: plugin pyproject failed with: exit code=1: cd 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build; python3.13 
-m pytest --verbosity=2 -k "not Mixin"
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.14 
3.13" --parallel=2 returned exit code 13
make: *** [debian/rules:7: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit 
status 2
--------------------------------------------------------------------------------

--- End Message ---
--- Begin Message --- 
Source: orange-spectroscopy
Source-Version: 0.9.3-1
Done: Roland Mas <[email protected]>

We believe that the bug you reported is fixed in the latest version of
orange-spectroscopy, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Roland Mas <[email protected]> (supplier of updated orange-spectroscopy 
package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Mon, 27 Jul 2026 22:40:20 +0200
Source: orange-spectroscopy
Architecture: source
Version: 0.9.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian PaN Maintainers 
<[email protected]>
Changed-By: Roland Mas <[email protected]>
Closes: 1135060
Changes:
 orange-spectroscopy (0.9.3-1) unstable; urgency=medium
 .
   * New upstream release, which fixes: "tests fail with scipy 1.17: array
     must not contain infs or NaNs", thanks to Drew Parsons (Closes: #1135060).
Checksums-Sha1:
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orange-spectroscopy_0.9.3.orig.tar.gz
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orange-spectroscopy_0.9.3-1.debian.tar.xz
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orange-spectroscopy_0.9.3-1_amd64.buildinfo
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orange-spectroscopy_0.9.3.orig.tar.gz
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orange-spectroscopy_0.9.3-1_amd64.buildinfo
Files:
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orange-spectroscopy_0.9.3-1.dsc
 95e7b80c35a135d5d33b16d461863484 4354682 python optional 
orange-spectroscopy_0.9.3.orig.tar.gz
 7dfc4ddfdfe621883c262ba161d69267 7752 python optional 
orange-spectroscopy_0.9.3-1.debian.tar.xz
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orange-spectroscopy_0.9.3-1_amd64.buildinfo

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