Bug#1117398: marked as done (gap-cryst: FTBFS: 29 failures in 3 of 5 files)

Debian Bug Tracking System Sat, 01 Nov 2025 10:51:21 -0700

Your message dated Sat, 01 Nov 2025 17:49:32 +0000
with message-id <[email protected]>
and subject line Bug#1117398: fixed in gap-cryst 4.1.30-1
has caused the Debian Bug report #1117398,
regarding gap-cryst: FTBFS: 29 failures in 3 of 5 files
to be marked as done.


This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)


-- 
1117398: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1117398
Debian Bug Tracking System
Contact [email protected] with problems

--- Begin Message ---

Package: src:gap-cryst
Version: 4.1.27-1
Severity: serious
Tags: ftbfs forky sid

Dear maintainer:

During a rebuild of all packages in unstable, this package failed to build.

Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:

https://people.debian.org/~sanvila/build-logs/202510/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:gap-cryst, so that this is still
visible in the BTS web page for this package.

Thanks.

--------------------------------------------------------------------------------
[...]
 debian/rules clean
dh_testdir
dh_testroot
make -C doc clean
make[1]: Entering directory '/<<PKGBUILDDIR>>/doc'
rm -f ./*.{html,txt,css,js}
rm -f ./make_manuals.out ./mathjax
rm -f ./manual.{aux,blg,brf,idx,ilg,ind,log,out,pnr,toc.gz,dvi,pdf,ps}
rm -f ./manual{,-bw}.{lab,six.gz}
rm -f manualbib.xml.bib
rm -f ../htm/*.htm
rm -f manual.example-?.tst
make[1]: Leaving directory '/<<PKGBUILDDIR>>/doc'
rm -rf debian/gaproot
rm -f debian/gap.tst

[... snipped ...]

iso := IsomorphismPcpGroup(G);;
[0m[2K[34m# Expected output:[0m
[30m[42m[0m[2K[34m# But found:[0m
[37m[41mError, no method found! For debugging hints type ?Recovery from NoMe\
thodFound
Error, no 2nd choice method found for `IsomorphismPcpGroup' on 1 arguments
[0m[2K[34m########[0m
[34m########> Diff in debian/gaproot/pkg/Cryst/tst/cryst.tst:125[0m
[34m# Input is:[0m
H := Image(iso);;
[0m[2K[34m# Expected output:[0m
[30m[42m[0m[2K[34m# But found:[0m
[37m[41mError, Variable: 'iso' must have a value
[0m[2K[34m########[0m
[34m########> Diff in debian/gaproot/pkg/Cryst/tst/cryst.tst:126[0m
[34m# Input is:[0m
h := Cgs(H)[1];;
[0m[2K[34m# Expected output:[0m
[30m[42m[0m[2K[34m# But found:[0m
[37m[41mError, Variable: 'H' must have a value
[0m[2K[34m########[0m
[34m########> Diff in debian/gaproot/pkg/Cryst/tst/cryst.tst:127[0m
[34m# Input is:[0m
g := PreImage(iso, h);;
[0m[2K[34m# Expected output:[0m
[30m[42m[0m[2K[34m# But found:[0m
[37m[41mError, Variable: 'iso' must have a value
[0m[2K[34m########[0m
[34m########> Diff in debian/gaproot/pkg/Cryst/tst/cryst.tst:128[0m
[34m# Input is:[0m
h = Image(iso, g);
[0m[2K[34m# Expected output:[0m
[30m[42mtrue
[0m[2K[34m# But found:[0m
[37m[41mError, Variable: 'h' must have a value
[0m[2K[34m########[0m
[34m########> Diff in debian/gaproot/pkg/Cryst/tst/cryst.tst:130[0m
[34m# Input is:[0m
IsomorphismPcpGroup( PointGroup( G ) );;
[0m[2K[34m# Expected output:[0m
[30m[42m
[0m[2K[34m# But found:[0m
[37m[41mError, no method found! For debugging hints type ?Recovery from NoMe\
thodFound
Error, no 2nd choice method found for `IsomorphismPcpGroup' on 1 arguments
[0m[2K[34m########[0m
[34m########> Diff in debian/gaproot/pkg/Cryst/tst/cryst.tst:179[0m
[34m# Input is:[0m
W := WyckoffPositions(G);;
[0m[2K[34m# Expected output:[0m
[30m[42m[0m[2K[34m# But found:[0m
[37m[41mError, no method found! For debugging hints type ?Recovery from NoMe\
thodFound
Error, no 1st choice method found for `ClosureGroup' on 2 arguments
[0m[2K[34m########[0m
[34m########> Diff in debian/gaproot/pkg/Cryst/tst/cryst.tst:192[0m
[34m# Input is:[0m
Set(WyckoffPositions( G^C )) = Set(WyckoffPositions(SpaceGroupIT(3,183)^C));
[0m[2K[34m# Expected output:[0m
[30m[42mtrue

[0m[2K[34m# But found:[0m
[37m[41mError, no method found! For debugging hints type ?Recovery from NoMe\
thodFound
Error, no 1st choice method found for `ClosureGroup' on 2 arguments
[0m[2K[34m########[0m
[34m########> Diff in debian/gaproot/pkg/Cryst/tst/cryst.tst:197[0m
[34m# Input is:[0m
W := WyckoffPositions(G);;
[0m[2K[34m# Expected output:[0m
[30m[42m[0m[2K[34m# But found:[0m
[37m[41mError, no method found! For debugging hints type ?Recovery from NoMe\
thodFound
Error, no 1st choice method found for `ClosureGroup' on 2 arguments
[0m[2K[34m########[0m
[34m########> Diff in debian/gaproot/pkg/Cryst/tst/cryst.tst:201[0m
[34m# Input is:[0m
Set(WyckoffPositions( G^TransposedMat(C) )) = Set(WyckoffPositions(SpaceGroupO\
nLeftIT(3,183)^TransposedMat(C)));
[0m[2K[34m# Expected output:[0m
[30m[42mtrue
[0m[2K[34m# But found:[0m
[37m[41mError, no method found! For debugging hints type ?Recovery from NoMe\
thodFound
Error, no 1st choice method found for `ClosureGroup' on 2 arguments
[0m[2K[34m########[0m
[34m########> Diff in debian/gaproot/pkg/Cryst/tst/cryst.tst:206[0m
[34m# Input is:[0m
W := WyckoffPositions(G);;
[0m[2K[34m# Expected output:[0m
[30m[42m[0m[2K[34m# But found:[0m
[37m[41mError, no method found! For debugging hints type ?Recovery from NoMe\
thodFound
Error, no 1st choice method found for `ClosureGroup' on 2 arguments
[0m[2K[34m########[0m
[34m########> Diff in debian/gaproot/pkg/Cryst/tst/cryst.tst:240[0m
[34m# Input is:[0m
List( M, x -> IsomorphismPcpGroup( PointGroup(x) ) );;
[0m[2K[34m# Expected output:[0m
[30m[42m
[0m[2K[34m# But found:[0m
[37m[41mError, no method found! For debugging hints type ?Recovery from NoMe\
thodFound
Error, no 2nd choice method found for `IsomorphismPcpGroup' on 1 arguments
[0m[2K[34m########[0m
[34m########> Diff in debian/gaproot/pkg/Cryst/tst/cryst.tst:272[0m
[34m# Input is:[0m
List( M, x -> IsomorphismPcpGroup( PointGroup(x) ) );;
[0m[2K[34m# Expected output:[0m
[30m[42m
[0m[2K[34m# But found:[0m
[37m[41mError, no method found! For debugging hints type ?Recovery from NoMe\
thodFound
Error, no 2nd choice method found for `IsomorphismPcpGroup' on 1 arguments
[0m[2K[34m########[0m
[34m########> Diff in debian/gaproot/pkg/Cryst/tst/cryst.tst:277[0m
[34m# Input is:[0m
NaturalHomomorphismByNormalSubgroup( G, K );;
[0m[2K[34m# Expected output:[0m
[30m[42m
[0m[2K[34m# But found:[0m
[37m[41mError, no method found! For debugging hints type ?Recovery from NoMe\
thodFound
Error, no 2nd choice method found for `IsomorphismPcpGroup' on 1 arguments
[0m[2K[34m########[0m
[34m########> Diff in debian/gaproot/pkg/Cryst/tst/cryst.tst:282[0m
[34m# Input is:[0m
NaturalHomomorphismByNormalSubgroup( G, K );;
[0m[2K[34m# Expected output:[0m
[30m[42m
[0m[2K[34m# But found:[0m
[37m[41mError, no method found! For debugging hints type ?Recovery from NoMe\
thodFound
Error, no 2nd choice method found for `IsomorphismPcpGroup' on 1 arguments
[0m[2K[34m########[0m
    6650 ms (141 ms GC) and 1005MB allocated for cryst.tst
testing: debian/gaproot/pkg/Cryst/tst/manual.tst
[34m########> Diff in debian/gaproot/pkg/Cryst/tst/manual.tst:70[0m
[34m# Input is:[0m
W := WyckoffPositions(S);
[0m[2K[34m# Expected output:[0m
[30m[42m[ < Wyckoff position, point group 3, translation := [ 0, 0 ], 
    basis := [  ] >
    , < Wyckoff position, point group 3, translation := [ 2/3, 1/3 ], 
    basis := [  ] >
    , < Wyckoff position, point group 3, translation := [ 1/3, 2/3 ], 
    basis := [  ] >
    , < Wyckoff position, point group 2, translation := [ 0, 0 ], 
    basis := [ [ 1, -1 ] ] >
    , < Wyckoff position, point group 1, translation := [ 0, 0 ], 
    basis := [ [ 1, 0 ], [ 0, 1 ] ] >
     ]

[0m[2K[34m# But found:[0m
[37m[41mError, no method found! For debugging hints type ?Recovery from NoMe\
thodFound
Error, no 1st choice method found for `ClosureGroup' on 2 arguments
[0m[2K[34m########[0m
[34m########> Diff in debian/gaproot/pkg/Cryst/tst/manual.tst:94[0m
[34m# Input is:[0m
ForAll( W, IsWyckoffPosition );
[0m[2K[34m# Expected output:[0m
[30m[42mtrue

[0m[2K[34m# But found:[0m
[37m[41mError, Variable: 'W' must have a value
[0m[2K[34m########[0m
[34m########> Diff in debian/gaproot/pkg/Cryst/tst/manual.tst:97[0m
[34m# Input is:[0m
WyckoffBasis( W[4] );
[0m[2K[34m# Expected output:[0m
[30m[42m[ [ 1, -1 ] ]

[0m[2K[34m# But found:[0m
[37m[41mError, Variable: 'W' must have a value
[0m[2K[34m########[0m
[34m########> Diff in debian/gaproot/pkg/Cryst/tst/manual.tst:100[0m
[34m# Input is:[0m
WyckoffTranslation( W[3] );
[0m[2K[34m# Expected output:[0m
[30m[42m[ 1/3, 2/3 ]

[0m[2K[34m# But found:[0m
[37m[41mError, Variable: 'W' must have a value
[0m[2K[34m########[0m
[34m########> Diff in debian/gaproot/pkg/Cryst/tst/manual.tst:103[0m
[34m# Input is:[0m
WyckoffSpaceGroup( W[1] );
[0m[2K[34m# Expected output:[0m
[30m[42mSpaceGroupOnRightIT(2,14,'1')

[0m[2K[34m# But found:[0m
[37m[41mError, Variable: 'W' must have a value
[0m[2K[34m########[0m
[34m########> Diff in debian/gaproot/pkg/Cryst/tst/manual.tst:106[0m
[34m# Input is:[0m
stab := WyckoffStabilizer( W[4] );
[0m[2K[34m# Expected output:[0m
[30m[42mGroup([ [ [ 0, -1, 0 ], [ -1, 0, 0 ], [ 0, 0, 1 ] ] ])

[0m[2K[34m# But found:[0m
[37m[41mError, Variable: 'W' must have a value
[0m[2K[34m########[0m
[34m########> Diff in debian/gaproot/pkg/Cryst/tst/manual.tst:109[0m
[34m# Input is:[0m
IsAffineCrystGroupOnRight( stab );
[0m[2K[34m# Expected output:[0m
[30m[42mtrue

[0m[2K[34m# But found:[0m
[37m[41mError, Variable: 'stab' must have a value
[0m[2K[34m########[0m
[34m########> Diff in debian/gaproot/pkg/Cryst/tst/manual.tst:112[0m
[34m# Input is:[0m
orb := WyckoffOrbit( W[4] );
[0m[2K[34m# Expected output:[0m
[30m[42m[ < Wyckoff position, point group 2, translation := [ 0, 0 ], 
    basis := [ [ 1, -1 ] ] >
    , < Wyckoff position, point group 2, translation := [ 0, 0 ], 
    basis := [ [ 1, 2 ] ] >
    , < Wyckoff position, point group 2, translation := [ 0, 0 ], 
    basis := [ [ -2, -1 ] ] >
     ]
[0m[2K[34m# But found:[0m
[37m[41mError, Variable: 'W' must have a value
[0m[2K[34m########[0m
[34m########> Diff in debian/gaproot/pkg/Cryst/tst/manual.tst:120[0m
[34m# Input is:[0m
Set(orb);
[0m[2K[34m# Expected output:[0m
[30m[42m[ < Wyckoff position, point group 2, translation := [ 0, 0 ], 
    basis := [ [ 1, -1 ] ] >
     ]

[0m[2K[34m# But found:[0m
[37m[41mError, Variable: 'orb' must have a value
[0m[2K[34m########[0m
     147 ms (30 ms GC) and 24.3MB allocated for manual.tst
testing: debian/gaproot/pkg/Cryst/tst/subgrp.tst
    1387 ms (63 ms GC) and 300MB allocated for subgrp.tst
testing: debian/gaproot/pkg/Cryst/tst/wyckoff.tst
[34m########> Diff in debian/gaproot/pkg/Cryst/tst/wyckoff.tst:5[0m
[34m# Input is:[0m
List( [1..17], i -> Length( WyckoffPositions( SpaceGroupIT(2,i) ) ) );
[0m[2K[34m# Expected output:[0m
[30m[42m[ 1, 5, 3, 1, 2, 9, 4, 3, 6, 4, 7, 4, 4, 5, 4, 4, 6 ]

[0m[2K[34m# But found:[0m
[37m[41mError, no method found! For debugging hints type ?Recovery from NoMe\
thodFound
Error, no 1st choice method found for `ClosureGroup' on 2 arguments
[0m[2K[34m########[0m
[34m########> Diff in debian/gaproot/pkg/Cryst/tst/wyckoff.tst:8[0m
[34m# Input is:[0m
List( [1..23], i -> Length( WyckoffPositions( SpaceGroupIT(3,10*i-3) ) ) );
[0m[2K[34m# Expected output:[0m
[30m[42m[ 1, 5, 5, 4, 27, 5, 15, 4, 9, 11, 5, 9, 12, 8, 7, 4, 6, 14, 15, 6, \
11, 8, 9 ]

[0m[2K[34m# But found:[0m
[37m[41mError, no method found! For debugging hints type ?Recovery from NoMe\
thodFound
Error, no 1st choice method found for `ClosureGroup' on 2 arguments
[0m[2K[34m########[0m
      36 ms (28 ms GC) and 1.61MB allocated for wyckoff.tst
testing: debian/gaproot/pkg/Cryst/tst/zass.tst
     228 ms (30 ms GC) and 51.9MB allocated for zass.tst
-----------------------------------
total      8448 ms (292 ms GC) and 1.35GB allocated
             29 failures in 3 of 5 files

#I  Errors detected while testing

grep -q "^#I  No errors detected while testing" debian/gap.tst
make[1]: *** [debian/rules:18: execute_after_dh_auto_test] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:42: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------

--- End Message ---

--- Begin Message ---

Source: gap-cryst
Source-Version: 4.1.30-1
Done: Joachim Zobel <[email protected]>

We believe that the bug you reported is fixed in the latest version of
gap-cryst, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Joachim Zobel <[email protected]> (supplier of updated gap-cryst package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Sat, 01 Nov 2025 12:40:25 +0100
Source: gap-cryst
Architecture: source
Version: 4.1.30-1
Distribution: unstable
Urgency: medium
Maintainer: Joachim Zobel <[email protected]>
Changed-By: Joachim Zobel <[email protected]>
Closes: 1117398 1117399
Changes:
 gap-cryst (4.1.30-1) unstable; urgency=medium
 .
   * New upstream release (Closes: #1117398, #1117399)
   * Added new dependency gap-polenta
   * Adapted to current gap2deb
   * Bumped Standards-Version
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 d1af372226fd4ee492756ffc3c95d635461852f8 254453 gap-cryst_4.1.30.orig.tar.gz
 39d436260c0ecf7a1d55aba60946a7d0906a5412 3996 gap-cryst_4.1.30-1.debian.tar.xz
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gap-cryst_4.1.30-1_source.buildinfo
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Files:
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gap-cryst_4.1.30.orig.tar.gz
 f98d43e7aac95eeb445fc46729f93afb 3996 math optional 
gap-cryst_4.1.30-1.debian.tar.xz
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gap-cryst_4.1.30-1_source.buildinfo

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--- End Message ---

Bug#1117398: marked as done (gap-cryst: FTBFS: 29 failures in 3 of 5 files)

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