Your message dated Sun, 12 Oct 2025 16:49:43 +0000
with message-id <[email protected]>
and subject line Bug#1113093: fixed in lambda-align2 2.0.1-3.1
has caused the Debian Bug report #1113093,
regarding lambda-align2: FTBFS with CMake 4
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1113093: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1113093
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: lambda-align2
Version: 2.0.1-3
Severity: serious
User: [email protected]
Usertags: cmake-4
Tags: ftbfs, forky, sid
Dear maintainer,
During a test rebuild for CMake 4, lambda-align2 failed to rebuild.
Log Summary:
-------------------------------------------------------------------------------
[...]
dpkg-source: info: extracting lambda-align2 in
/build/reproducible-path/lambda-align2-2.0.1
dpkg-source: info: unpacking lambda-align2_2.0.1.orig.tar.gz
dpkg-source: info: unpacking lambda-align2_2.0.1-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying enable_tests
dpkg-source: info: applying set-seqan-cmake-dir.patch
dpkg-source: info: applying force-link-rt-pthread.patch
dpkg-source: info: applying
0006-Fix-binaries-not-being-installed-on-non-amd64-archs.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=C.UTF-8
LC_ALL=C.UTF-8
LOGNAME=sbuild
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SHELL=/bin/sh
USER=sbuild
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -b
dpkg-buildpackage: info: source package lambda-align2
dpkg-buildpackage: info: source version 2.0.1-3
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Enrico Seiler
<[email protected]>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean --builddirectory=build
debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1'
if ls tests/*~ 1> /dev/null 2>&1; then \
for backup in tests/*~; do mv ${backup} ${backup%\~}; done; \
fi
dh_auto_clean
make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1'
dh_autoreconf_clean -O--builddirectory=build
dh_clean -O--builddirectory=build
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/lambda-align2.substvars debian/files
rm -fr -- debian/lambda-align2/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path
.\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o
-type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a \( -name autom4te.cache -o -name __pycache__ \)
-prune -exec rm -rf {} + \) \)
debian/rules binary
dh binary --builddirectory=build
dh_update_autotools_config -O--builddirectory=build
dh_autoreconf -O--builddirectory=build
debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/reproducible-path/lambda-align2-2.0.1'
dh_auto_configure -- \
-DLAMBDA_NATIVE_BUILD=OFF \
-DLAMBDA_MMAPPED_DB=OFF \
-DCMAKE_BUILD_TYPE=Release \
"-DLAMBDA_MULTIOPT_BUILD=0"
cd build && DEB_PYTHON_INSTALL_LAYOUT=deb
PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr
-DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc
-DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON
-DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF
-DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON
-DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run
-DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles"
-DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu
-DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=OFF -DCMAKE_BUILD_TYPE=Release
-DLAMBDA_MULTIOPT_BUILD=0 ..
CMake Error at CMakeLists.txt:5 (cmake_minimum_required):
Compatibility with CMake < 3.5 has been removed from CMake.
Update the VERSION argument <min> value. Or, use the <min>...<max> syntax
to tell CMake that the project requires at least <min> but has been updated
to work with policies introduced by <max> or earlier.
Or, add -DCMAKE_POLICY_VERSION_MINIMUM=3.5 to try configuring anyway.
-- Configuring incomplete, errors occurred!
cd build && tail -v -n \+0 CMakeCache.txt
==> CMakeCache.txt <==
# This is the CMakeCache file.
# For build in directory: /build/reproducible-path/lambda-align2-2.0.1/build
# It was generated by CMake: /usr/bin/cmake
# You can edit this file to change values found and used by cmake.
# If you do not want to change any of the values, simply exit the editor.
# If you do want to change a value, simply edit, save, and exit the editor.
# The syntax for the file is as follows:
# KEY:TYPE=VALUE
# KEY is the name of a variable in the cache.
# TYPE is a hint to GUIs for the type of VALUE, DO NOT EDIT TYPE!.
# VALUE is the current value for the KEY.
########################
# EXTERNAL cache entries
########################
//No help, variable specified on the command line.
CMAKE_BUILD_TYPE:UNINITIALIZED=Release
//No help, variable specified on the command line.
CMAKE_EXPORT_NO_PACKAGE_REGISTRY:UNINITIALIZED=ON
//No help, variable specified on the command line.
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY:UNINITIALIZED=ON
//Value Computed by CMake.
CMAKE_FIND_PACKAGE_REDIRECTS_DIR:STATIC=/build/reproducible-path/lambda-align2-2.0.1/build/CMakeFiles/pkgRedirects
//No help, variable specified on the command line.
CMAKE_FIND_USE_PACKAGE_REGISTRY:UNINITIALIZED=OFF
//No help, variable specified on the command line.
CMAKE_INSTALL_LIBDIR:UNINITIALIZED=lib/aarch64-linux-gnu
//No help, variable specified on the command line.
CMAKE_INSTALL_LOCALSTATEDIR:UNINITIALIZED=/var
//No help, variable specified on the command line.
CMAKE_INSTALL_PREFIX:UNINITIALIZED=/usr
//No help, variable specified on the command line.
CMAKE_INSTALL_RUNSTATEDIR:UNINITIALIZED=/run
//No help, variable specified on the command line.
CMAKE_INSTALL_SYSCONFDIR:UNINITIALIZED=/etc
//No help, variable specified on the command line.
CMAKE_SKIP_INSTALL_ALL_DEPENDENCY:UNINITIALIZED=ON
//No help, variable specified on the command line.
CMAKE_VERBOSE_MAKEFILE:UNINITIALIZED=ON
//No help, variable specified on the command line.
FETCHCONTENT_FULLY_DISCONNECTED:UNINITIALIZED=ON
//No help, variable specified on the command line.
LAMBDA_MMAPPED_DB:UNINITIALIZED=OFF
//No help, variable specified on the command line.
LAMBDA_MULTIOPT_BUILD:UNINITIALIZED=0
//No help, variable specified on the command line.
LAMBDA_NATIVE_BUILD:UNINITIALIZED=OFF
########################
# INTERNAL cache entries
########################
//This is the directory where this CMakeCache.txt was created
CMAKE_CACHEFILE_DIR:INTERNAL=/build/reproducible-path/lambda-align2-2.0.1/build
//Major version of cmake used to create the current loaded cache
CMAKE_CACHE_MAJOR_VERSION:INTERNAL=4
//Minor version of cmake used to create the current loaded cache
CMAKE_CACHE_MINOR_VERSION:INTERNAL=1
//Patch version of cmake used to create the current loaded cache
CMAKE_CACHE_PATCH_VERSION:INTERNAL=1
//Path to CMake executable.
CMAKE_COMMAND:INTERNAL=/usr/bin/cmake
//Path to cpack program executable.
CMAKE_CPACK_COMMAND:INTERNAL=/usr/bin/cpack
//Path to ctest program executable.
CMAKE_CTEST_COMMAND:INTERNAL=/usr/bin/ctest
//Name of external makefile project generator.
CMAKE_EXTRA_GENERATOR:INTERNAL=
//Name of generator.
CMAKE_GENERATOR:INTERNAL=Unix Makefiles
//Generator instance identifier.
CMAKE_GENERATOR_INSTANCE:INTERNAL=
//Name of generator platform.
CMAKE_GENERATOR_PLATFORM:INTERNAL=
//Name of generator toolset.
CMAKE_GENERATOR_TOOLSET:INTERNAL=
//Source directory with the top level CMakeLists.txt file for this
// project
CMAKE_HOME_DIRECTORY:INTERNAL=/build/reproducible-path/lambda-align2-2.0.1
//Name of CMakeLists files to read
CMAKE_LIST_FILE_NAME:INTERNAL=CMakeLists.txt
//number of local generators
CMAKE_NUMBER_OF_MAKEFILES:INTERNAL=1
//Path to CMake installation.
CMAKE_ROOT:INTERNAL=/usr/share/cmake-4.1
dh_auto_configure: error: cd build && DEB_PYTHON_INSTALL_LAYOUT=deb
PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr
-DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc
-DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON
-DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF
-DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON
-DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run
-DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles"
-DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu
-DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=OFF -DCMAKE_BUILD_TYPE=Release
-DLAMBDA_MULTIOPT_BUILD=0 .. returned exit code 1
make[1]: *** [debian/rules:38: override_dh_auto_configure] Error 2
make[1]: Leaving directory '/build/reproducible-path/lambda-align2-2.0.1'
make: *** [debian/rules:18: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2025-08-30T03:06:52Z
-------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here (for the next 30 days):
https://debusine.debian.net/artifact/2398838/
The most likely cause of build failures is the removed backwards compatibility
for
CMake versions earlier than 3.5. You can find additional information in my
debian-devel announcement:
https://lists.debian.org/debian-devel/2025/04/msg00310.html
About the archive rebuild: The build was made on debusine.debian.net,
using sbuild.
You can find the build task here:
https://debusine.debian.net/work-request/153649/
If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.
Thanks,
Timo
--- End Message ---
--- Begin Message ---
Source: lambda-align2
Source-Version: 2.0.1-3.1
Done: Adrian Bunk <[email protected]>
We believe that the bug you reported is fixed in the latest version of
lambda-align2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Adrian Bunk <[email protected]> (supplier of updated lambda-align2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 11 Oct 2025 21:29:07 +0300
Source: lambda-align2
Architecture: source
Version: 2.0.1-3.1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Adrian Bunk <[email protected]>
Closes: 1113093
Changes:
lambda-align2 (2.0.1-3.1) unstable; urgency=medium
.
* Non-maintainer upload.
* Fix FTBFS with CMake 4. (Closes: #1113093)
Checksums-Sha1:
a885d09b27448c45ecbb42a0e4747f631d88b0f9 2186 lambda-align2_2.0.1-3.1.dsc
6f3a499e23523afcc41befb823fbee9272af5c39 17876
lambda-align2_2.0.1-3.1.debian.tar.xz
Checksums-Sha256:
b3827f1097ececebb423523ac364d828887e218922babdee7ed0a2faf3ae2b8d 2186
lambda-align2_2.0.1-3.1.dsc
bd887a2539c60679f2989a355c0825b69a326a667d4b0509fd7a878371a51da9 17876
lambda-align2_2.0.1-3.1.debian.tar.xz
Files:
089157981cfc6cd834875016b6bc39eb 2186 science optional
lambda-align2_2.0.1-3.1.dsc
6937db6b7285de44939463cd2b7cd2aa 17876 science optional
lambda-align2_2.0.1-3.1.debian.tar.xz
-----BEGIN PGP SIGNATURE-----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=1mFc
-----END PGP SIGNATURE-----
pgp4D5TGjX4km.pgp
Description: PGP signature
--- End Message ---
