Source: beads Version: 1.1.22-1 Severity: serious User: [email protected] Usertags: cmake-4
Dear maintainer, During a test rebuild for CMake 4, beads failed to rebuild. Log Summary: ------------------------------------------------------------------------------- [...] +------------------------------------------------------------------------------+ | Build Fri, 29 Aug 2025 14:26:59 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: beads Binary: beads Architecture: any Version: 1.1.22-1 Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Andreas Tille <[email protected]>, Filippo Rusconi <[email protected]> Homepage: http://pappso.inrae.fr/bioinfo/beads Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/beads Vcs-Git: https://salsa.debian.org/med-team/beads.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, qtbase5-dev, cimg-dev, libodsstream-dev (>= 0.9.1) Package-List: beads deb science optional arch=any Checksums-Sha1: 67143a42c4fc870eed007e95d554a93dd3b67b12 39989619 beads_1.1.22.orig.tar.gz e1881dfec18e5e1bc431d702bd6186938406cf4d 12172 beads_1.1.22-1.debian.tar.xz Checksums-Sha256: cd328046cc357dc234c813d2a4a394f8932720541438a34d28f3a1333a584be2 39989619 beads_1.1.22.orig.tar.gz b60dc8d7c8d500985ca00f0fb448c97650c49e6b08c2bbba9d5d696188a4922e 12172 beads_1.1.22-1.debian.tar.xz Files: 1cc70362c5ec22ab496ecaa0a222e739 39989619 beads_1.1.22.orig.tar.gz d66068ffc04879ecef0a94dadf7af12b 12172 beads_1.1.22-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEsFMwThfW1Bndm0ZRQatITXaUz0IFAmOx2g4ACgkQQatITXaU z0IewhAAiu2hssEaQvQOX3tPnc4QzfXdxsvBlh4cQlZhCXALs6P3GxIes+rXlfN/ 9AGSjxn0FN2jtTPMsiXQ9vD/hq1iJofdgei5ffmfA6GES6gLfcXkJALsO2aviWFP VQWCbflZFcLV0FvtpTiEM4TJWBze8shtCxBVBB0hJco+TwjQYTeEQRS/oL1+4hHB QsaGSP7FBmWWwbsZC+cMiK62iZ9yhMqzn8obfErZoOb8iaa+VJXba5wgJa/atK68 +POba9ZQht/Bd+WStIji8AjWfEk/eoSURX3mxqTOa1s9AJH4/1i5G1sf7HwINauP 55LrFEBaUuB69zpqt3Nb5r4MQiXdspfzcP+i9HE4nqj0egrOcR5nr2G4k56ubRWR ffdtHwtT7khqfH3KWuxGp7JPpXm4IxHCKLtWvw3WlXNtOu8nORMMtFYh/wmK7cRX 4zzxM58YKswvxqeonZeQt70qMZd/8S8yStrjFXF2Sh8JnLaUhgx12xJb8OHpUleh 01xaMzfS0iK6P7CIIyrsJuUE4RKdpMOfKKkcTOYsJAqqsXq33hDsIw4/YNmadM1Q 9087i7oXyoXgyLlNlR8FT1hARyCjiIsYfpiQuHTNKoCRNFBMCYAKL3ATZBsLG9jF 5x123niBpwPQ40y1SkHo5HlIIk06yemDc6uKK/4UQdfYaSVn+D4= =o2LO -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./beads_1.1.22-1.dsc: no acceptable signature found dpkg-source: info: extracting beads in /build/reproducible-path/beads-1.1.22 dpkg-source: info: unpacking beads_1.1.22.orig.tar.gz dpkg-source: info: unpacking beads_1.1.22-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -b dpkg-buildpackage: info: source package beads dpkg-buildpackage: info: source version 1.1.22-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Filippo Rusconi <[email protected]> dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Error at CMakeLists.txt:8 (cmake_minimum_required): Compatibility with CMake < 3.5 has been removed from CMake. Update the VERSION argument <min> value. Or, use the <min>...<max> syntax to tell CMake that the project requires at least <min> but has been updated to work with policies introduced by <max> or earlier. Or, add -DCMAKE_POLICY_VERSION_MINIMUM=3.5 to try configuring anyway. -- Configuring incomplete, errors occurred! cd obj-aarch64-linux-gnu && tail -v -n \+0 CMakeCache.txt ==> CMakeCache.txt <== # This is the CMakeCache file. # For build in directory: /build/reproducible-path/beads-1.1.22/obj-aarch64-linux-gnu # It was generated by CMake: /usr/bin/cmake # You can edit this file to change values found and used by cmake. # If you do not want to change any of the values, simply exit the editor. # If you do want to change a value, simply edit, save, and exit the editor. # The syntax for the file is as follows: # KEY:TYPE=VALUE # KEY is the name of a variable in the cache. # TYPE is a hint to GUIs for the type of VALUE, DO NOT EDIT TYPE!. # VALUE is the current value for the KEY. ######################## # EXTERNAL cache entries ######################## //No help, variable specified on the command line. CMAKE_BUILD_TYPE:UNINITIALIZED=None //No help, variable specified on the command line. CMAKE_EXPORT_NO_PACKAGE_REGISTRY:UNINITIALIZED=ON //No help, variable specified on the command line. CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY:UNINITIALIZED=ON //Value Computed by CMake. CMAKE_FIND_PACKAGE_REDIRECTS_DIR:STATIC=/build/reproducible-path/beads-1.1.22/obj-aarch64-linux-gnu/CMakeFiles/pkgRedirects //No help, variable specified on the command line. CMAKE_FIND_USE_PACKAGE_REGISTRY:UNINITIALIZED=OFF //No help, variable specified on the command line. CMAKE_INSTALL_LIBDIR:UNINITIALIZED=lib/aarch64-linux-gnu //No help, variable specified on the command line. CMAKE_INSTALL_LOCALSTATEDIR:UNINITIALIZED=/var //No help, variable specified on the command line. CMAKE_INSTALL_PREFIX:UNINITIALIZED=/usr //No help, variable specified on the command line. CMAKE_INSTALL_RUNSTATEDIR:UNINITIALIZED=/run //No help, variable specified on the command line. CMAKE_INSTALL_SYSCONFDIR:UNINITIALIZED=/etc //No help, variable specified on the command line. CMAKE_SKIP_INSTALL_ALL_DEPENDENCY:UNINITIALIZED=ON //No help, variable specified on the command line. CMAKE_VERBOSE_MAKEFILE:UNINITIALIZED=ON //No help, variable specified on the command line. FETCHCONTENT_FULLY_DISCONNECTED:UNINITIALIZED=ON ######################## # INTERNAL cache entries ######################## //This is the directory where this CMakeCache.txt was created CMAKE_CACHEFILE_DIR:INTERNAL=/build/reproducible-path/beads-1.1.22/obj-aarch64-linux-gnu //Major version of cmake used to create the current loaded cache CMAKE_CACHE_MAJOR_VERSION:INTERNAL=4 //Minor version of cmake used to create the current loaded cache CMAKE_CACHE_MINOR_VERSION:INTERNAL=1 //Patch version of cmake used to create the current loaded cache CMAKE_CACHE_PATCH_VERSION:INTERNAL=1 //Path to CMake executable. CMAKE_COMMAND:INTERNAL=/usr/bin/cmake //Path to cpack program executable. CMAKE_CPACK_COMMAND:INTERNAL=/usr/bin/cpack //Path to ctest program executable. CMAKE_CTEST_COMMAND:INTERNAL=/usr/bin/ctest //Name of external makefile project generator. CMAKE_EXTRA_GENERATOR:INTERNAL= //Name of generator. CMAKE_GENERATOR:INTERNAL=Unix Makefiles //Generator instance identifier. CMAKE_GENERATOR_INSTANCE:INTERNAL= //Name of generator platform. CMAKE_GENERATOR_PLATFORM:INTERNAL= //Name of generator toolset. CMAKE_GENERATOR_TOOLSET:INTERNAL= //Source directory with the top level CMakeLists.txt file for this // project CMAKE_HOME_DIRECTORY:INTERNAL=/build/reproducible-path/beads-1.1.22 //Name of CMakeLists files to read CMAKE_LIST_FILE_NAME:INTERNAL=CMakeLists.txt //number of local generators CMAKE_NUMBER_OF_MAKEFILES:INTERNAL=1 //Path to CMake installation. CMAKE_ROOT:INTERNAL=/usr/share/cmake-4.1 dh_auto_configure: error: cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. returned exit code 1 make: *** [debian/rules:10: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2025-08-29T14:27:04Z ------------------------------------------------------------------------------- The above is just how the build ends and not necessarily the most relevant part. If required, the full build log is available here (for the next 30 days): https://debusine.debian.net/artifact/2389279/ The most likely cause of build failures is the removed backwards compatibility for CMake versions earlier than 3.5. You can find additional information in my debian-devel announcement: https://lists.debian.org/debian-devel/2025/04/msg00310.html About the archive rebuild: The build was made on debusine.debian.net, using sbuild. You can find the build task here: https://debusine.debian.net/work-request/152431/ If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the BTS web page for this package. Thanks, Timo
