On 12 April 2025 at 16:21, Santiago Vila wrote:
| Package: src:rpy2
| Version: 3.5.17-1
| Severity: serious
| Tags: ftbfs trixie sid
|
| Dear maintainer:
|
| During a rebuild of all packages in unstable, your package failed to build:
|
|
--------------------------------------------------------------------------------
| [...]
| debian/rules clean
| dh clean --with python3 --buildsystem=pybuild
| debian/rules override_dh_auto_clean
| make[1]: Entering directory '/<<PKGBUILDDIR>>'
| echo "Skipping"
| Skipping
| make[1]: Leaving directory '/<<PKGBUILDDIR>>'
| dh_autoreconf_clean -O--buildsystem=pybuild
| debian/rules override_dh_clean
| make[1]: Entering directory '/<<PKGBUILDDIR>>'
| dh_clean
| make[1]: Leaving directory '/<<PKGBUILDDIR>>'
| debian/rules binary
| dh binary --with python3 --buildsystem=pybuild
| dh_update_autotools_config -O--buildsystem=pybuild
| dh_autoreconf -O--buildsystem=pybuild
| dh_auto_configure -O--buildsystem=pybuild
| I: pybuild base:311: python3.13 setup.py config
| /usr/bin/ld: cannot find -lzstd: No such file or directory
Noted. I will look into it.
Thanks, Dirk
| collect2: error: ld returned 1 exit status
| Traceback (most recent call last):
| File "/usr/lib/python3/dist-packages/setuptools/_distutils/spawn.py", line
70, in spawn
| subprocess.check_call(cmd, env=_inject_macos_ver(env))
| ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
| File "/usr/lib/python3.13/subprocess.py", line 419, in check_call
| raise CalledProcessError(retcode, cmd)
| subprocess.CalledProcessError: Command '['/usr/bin/x86_64-linux-gnu-gcc',
'/tmp/tmp_pw_r_0gujo9hr/tmp/tmp_pw_r_0gujo9hr/test_pw_r.o', '-L/usr/lib/R/lib',
'-lR', '-lpcre2-8', '-ldeflate', '-lzstd', '-llzma', '-lbz2', '-lz', '-ltirpc',
'-lrt', '-ldl', '-lm', '-licuuc', '-licui18n', '-o',
'/tmp/tmp_pw_r_0gujo9hr/test_pw_r']' returned non-zero exit status 1.
|
| The above exception was the direct cause of the following exception:
|
| Traceback (most recent call last):
| File
"/usr/lib/python3/dist-packages/setuptools/_distutils/unixccompiler.py", line
287, in link
| self.spawn(linker + ld_args)
| ~~~~~~~~~~^^^^^^^^^^^^^^^^^^
| File "/usr/lib/python3/dist-packages/setuptools/_distutils/ccompiler.py",
line 1052, in spawn
| spawn(cmd, dry_run=self.dry_run, **kwargs)
| ~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
| File "/usr/lib/python3/dist-packages/setuptools/_distutils/spawn.py", line
76, in spawn
| raise DistutilsExecError(
| f"command {_debug(cmd)!r} failed with exit code {err.returncode}"
| ) from err
| distutils.errors.DistutilsExecError: command '/usr/bin/x86_64-linux-gnu-gcc'
failed with exit code 1
|
| During handling of the above exception, another exception occurred:
|
| Traceback (most recent call last):
| File "/<<PKGBUILDDIR>>/setup.py", line 141, in <module>
| c_extension_status = get_r_c_extension_status(
| r_home,
| force_ok = os.environ.get('RPY2_API_FORCE') == 'True'
| )
| File "/<<PKGBUILDDIR>>/setup.py", line 121, in get_r_c_extension_status
| status = get_c_extension_status(libraries=c_ext.libraries,
| include_dirs=c_ext.include_dirs,
| library_dirs=c_ext.library_dirs)
| File "/<<PKGBUILDDIR>>/setup.py", line 82, in get_c_extension_status
| compiler.link_executable(
| ~~~~~~~~~~~~~~~~~~~~~~~~^
| compiler.compile([src_file], output_dir=tmp_dir,
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
| ...<2 lines>...
| libraries=libraries,
| ^^^^^^^^^^^^^^^^^^^^
| library_dirs=library_dirs)
| ^^^^^^^^^^^^^^^^^^^^^^^^^^
| File "/usr/lib/python3/dist-packages/setuptools/_distutils/ccompiler.py",
line 788, in link_executable
| self.link(
| ~~~~~~~~~^
| CCompiler.EXECUTABLE,
| ^^^^^^^^^^^^^^^^^^^^^
| ...<11 lines>...
| target_lang,
| ^^^^^^^^^^^^
| )
| ^
| File
"/usr/lib/python3/dist-packages/setuptools/_distutils/unixccompiler.py", line
289, in link
| raise LinkError(msg)
| distutils.errors.LinkError: command '/usr/bin/x86_64-linux-gnu-gcc' failed
with exit code 1
| E: pybuild pybuild:389: configure: plugin distutils failed with: exit code=1:
python3.13 setup.py config
| dh_auto_configure: error: pybuild --configure -i python{version} -p 3.13
returned exit code 13
| make: *** [debian/rules:19: binary] Error 25
| dpkg-buildpackage: error: debian/rules binary subprocess returned exit status
2
|
--------------------------------------------------------------------------------
|
| The above is just how the build ends and not necessarily the most relevant
part.
| If required, the full build log is available here:
|
| https://people.debian.org/~sanvila/build-logs/202504/
|
| About the archive rebuild: The build was made on virtual machines from AWS,
| using sbuild and a reduced chroot with only build-essential packages.
|
| If you could not reproduce the bug please contact me privately, as I
| am willing to provide ssh access to a virtual machine where the bug is
| fully reproducible.
|
| If this is really a bug in one of the build-depends, please use
| reassign and add an affects on src:rpy2, so that this is still
| visible in the BTS web page for this package.
|
| Thanks.
--
dirk.eddelbuettel.com | @eddelbuettel | [email protected]
