Bug#1100817: marked as done (toil: FTBFS: AssertionError: None == None)

[Debian Bug Tracking System]

Your message dated Wed, 19 Mar 2025 12:16:23 +0000
with message-id <e1tuslp-00874p...@fasolo.debian.org>
and subject line Bug#1100817: fixed in toil 8.0.0-2
has caused the Debian Bug report #1100817,
regarding toil: FTBFS: AssertionError: None == None
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1100817: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1100817
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

--- Begin Message ---

Package: src:toil
Version: 8.0.0-1
Severity: serious
Tags: ftbfs trixie sid

Dear maintainer:

During a rebuild of all packages in unstable, your package failed to build:

--------------------------------------------------------------------------------
[...]
 debian/rules clean
dh clean --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
   debian/rules execute_after_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -rf docs/_build
find . -name "*.pyc" -delete
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary
dh binary --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild

[... snipped ...]

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toil/test/provisioners/gceProvisionerTest.py::GCEAutoscaleTestMultipleNodeTypes::testAutoScale
 
toil/test/provisioners/gceProvisionerTest.py::GCERestartTest::testAutoScaledCluster
 
[gw1] [ 97%] SKIPPED 
toil/test/provisioners/gceProvisionerTest.py::GCERestartTest::testAutoScaledCluster
 
toil/test/provisioners/provisionerTest.py::ProvisionerTest::test_node_type_parsing
 
[gw1] [ 97%] PASSED 
toil/test/provisioners/provisionerTest.py::ProvisionerTest::test_node_type_parsing
 
toil/test/server/serverTest.py::ToilServerUtilsTest::test_workflow_canceling_recovery
 
[gw1] [ 97%] SKIPPED 
toil/test/server/serverTest.py::ToilServerUtilsTest::test_workflow_canceling_recovery
 
toil/test/server/serverTest.py::FileStateStoreTest::test_state_store 
[gw1] [ 97%] SKIPPED 
toil/test/server/serverTest.py::FileStateStoreTest::test_state_store 
toil/test/server/serverTest.py::FileStateStoreURLTest::test_state_store 
[gw1] [ 97%] SKIPPED 
toil/test/server/serverTest.py::FileStateStoreURLTest::test_state_store 
toil/test/src/environmentTest.py::EnvironmentTest::test_environment 
[gw0] [ 97%] PASSED 
toil/test/src/threadingTest.py::ThreadingTest::testGlobalMutexOrdering 
toil/test/src/threadingTest.py::ThreadingTest::testLastProcessStanding 
[gw0] [ 98%] PASSED 
toil/test/src/threadingTest.py::ThreadingTest::testLastProcessStanding 
toil/test/jobStores/jobStoreTest.py::InvalidAWSJobStoreTest::testInvalidJobStoreName
 
[gw0] [ 98%] SKIPPED 
toil/test/jobStores/jobStoreTest.py::InvalidAWSJobStoreTest::testInvalidJobStoreName
 
toil/test/src/promisesTest.py::ChainedIndexedPromisesTest::test 
[gw0] [ 98%] PASSED 
toil/test/src/promisesTest.py::ChainedIndexedPromisesTest::test 
toil/test/src/promisesTest.py::PathIndexingPromiseTest::test 
[gw0] [ 98%] PASSED 
toil/test/src/promisesTest.py::PathIndexingPromiseTest::test 
toil/test/src/realtimeLoggerTest.py::RealtimeLoggerTest::testRealtimeLogger 
[gw1] [ 98%] PASSED 
toil/test/src/environmentTest.py::EnvironmentTest::test_environment 
toil/test/src/helloWorldTest.py::HelloWorldTest::testHelloWorld 
[gw0] [ 98%] PASSED 
toil/test/src/realtimeLoggerTest.py::RealtimeLoggerTest::testRealtimeLogger 
toil/test/src/systemTest.py::SystemTest::testAtomicityOfNonEmptyDirectoryRenames
 
[gw0] [ 99%] PASSED 
toil/test/src/systemTest.py::SystemTest::testAtomicityOfNonEmptyDirectoryRenames
 
toil/test/src/workerTest.py::WorkerTests::testNextChainable 
[gw0] [ 99%] PASSED toil/test/src/workerTest.py::WorkerTests::testNextChainable 
toil/test/utils/toilKillTest.py::ToilKillTestWithAWSJobStore::test_cwl_toil_kill
 
[gw0] [ 99%] SKIPPED 
toil/test/utils/toilKillTest.py::ToilKillTestWithAWSJobStore::test_cwl_toil_kill
 
[gw1] [ 99%] PASSED 
toil/test/src/helloWorldTest.py::HelloWorldTest::testHelloWorld 
toil/test/src/promisesTest.py::CachedUnpicklingJobStoreTest::test 
[gw1] [ 99%] PASSED 
toil/test/src/promisesTest.py::CachedUnpicklingJobStoreTest::test 
toil/test/utils/toilKillTest.py::ToilKillTest::test_cwl_toil_kill 
[gw1] [100%] PASSED 
toil/test/utils/toilKillTest.py::ToilKillTest::test_cwl_toil_kill 

=================================== FAILURES ===================================
____________________ ToilDocumentationTest.testMultiplejobs ____________________
[gw0] linux -- Python 3.13.2 /usr/bin/python3.13
Traceback (most recent call last):
  File "/usr/lib/python3.13/unittest/case.py", line 58, in testPartExecutor
    yield
  File "/usr/lib/python3.13/unittest/case.py", line 651, in run
    self._callTestMethod(testMethod)
    ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^
  File "/usr/lib/python3.13/unittest/case.py", line 606, in _callTestMethod
    if method() is not None:
       ~~~~~~^^
  File 
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_toil/build/toil/test/docs/scriptsTest.py",
 line 112, in testMultiplejobs
    self.checkExpectedPattern(
    ~~~~~~~~~~~~~~~~~~~~~~~~~^
        "tutorial_multiplejobs.py",
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^
    ...<2 lines>...
        " I have a message: last",
        ^^^^^^^^^^^^^^^^^^^^^^^^^^
    )
    ^
  File 
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_toil/build/toil/test/docs/scriptsTest.py",
 line 69, in checkExpectedPattern
    self.assertNotEqual(n, None, 
f"Pattern:\n{expectedPattern}\nOutput:\n{outerr}")
    
~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.13/unittest/case.py", line 916, in assertNotEqual
    raise self.failureException(msg)
AssertionError: None == None : Pattern:
Hello world, I have a message: first.*Hello world, I have a message: second or 
third.*Hello world, I have a message: second or third.*Hello world, I have a 
message: last
Output:
 [2025-03-18T22:31:54+0000] [MainThread] [I] [toil] Running Toil version 
8.0.0-d2ae0ea9ab49f238670dbf6aafd20de7afdd8514 on host r7a-large-1742336662.
[2025-03-18T22:31:54+0000] [MainThread] [I] [toil.realtimeLogger] Starting 
real-time logging.
[2025-03-18T22:31:54+0000] [MainThread] [I] [toil.leader] Issued job 
'helloWorld' kind-helloWorld/instance-2iw95dbs v1 with job batch system ID: 1 
and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
[2025-03-18T22:31:55+0000] [MainThread] [I] [toil.leader] 0 jobs are running, 0 
jobs are issued and waiting to run
[2025-03-18T22:31:55+0000] [MainThread] [I] [toil.leader] Issued job 
'helloWorld' kind-helloWorld/instance-juwonxuo v1 with job batch system ID: 2 
and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
[2025-03-18T22:31:55+0000] [MainThread] [I] [toil.leader] Issued job 
'helloWorld' kind-helloWorld/instance-gjlf17gr v1 with job batch system ID: 3 
and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
[2025-03-18T22:31:55+0000] [Thread-4 (statsAndLoggingAggregator)] [I] 
[toil.statsAndLogging] Got message from job at time 03-18-2025 22:31:55: Hello 
world, I have a message: first
[2025-03-18T22:31:55+0000] [MainThread] [I] [toil.leader] Issued job 
'helloWorld' kind-helloWorld/instance-9c_gnx81 v1 with job batch system ID: 4 
and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
[2025-03-18T22:31:55+0000] [Thread-4 (statsAndLoggingAggregator)] [I] 
[toil.statsAndLogging] Got message from job at time 03-18-2025 22:31:55: Hello 
world, I have a message: last
[2025-03-18T22:31:55+0000] [Thread-4 (statsAndLoggingAggregator)] [I] 
[toil.statsAndLogging] Got message from job at time 03-18-2025 22:31:55: Hello 
world, I have a message: second or third
[2025-03-18T22:31:55+0000] [Thread-4 (statsAndLoggingAggregator)] [I] 
[toil.statsAndLogging] Got message from job at time 03-18-2025 22:31:55: Hello 
world, I have a message: second or third
[2025-03-18T22:31:58+0000] [MainThread] [I] [toil.jobStores.abstractJobStore] 
Importing input 
file:///<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_toil/build/succeeded.log...
[2025-03-18T22:31:58+0000] [MainThread] [I] [toil.leader] Finished toil run 
successfully.
[2025-03-18T22:31:58+0000] [MainThread] [I] [toil.realtimeLogger] Stopping 
real-time logging server.
[2025-03-18T22:31:59+0000] [MainThread] [I] [toil.realtimeLogger] Joining 
real-time logging server thread.
[2025-03-18T22:31:59+0000] [MainThread] [I] [toil.common] Successfully deleted 
the job store: 
FileJobStore(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_toil/build/my-jobstore)

---------------------------- Captured stdout setup -----------------------------


[TEST] toil.test.docs.scriptsTest.ToilDocumentationTest:testMultiplejobs (Mar 
18 2025 15:31:54:677110 PDT)


___________________ ToilDocumentationTest.testMultiplejobs2 ____________________
[gw0] linux -- Python 3.13.2 /usr/bin/python3.13
Traceback (most recent call last):
  File "/usr/lib/python3.13/unittest/case.py", line 58, in testPartExecutor
    yield
  File "/usr/lib/python3.13/unittest/case.py", line 651, in run
    self._callTestMethod(testMethod)
    ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^
  File "/usr/lib/python3.13/unittest/case.py", line 606, in _callTestMethod
    if method() is not None:
       ~~~~~~^^
  File 
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_toil/build/toil/test/docs/scriptsTest.py",
 line 120, in testMultiplejobs2
    self.checkExpectedPattern(
    ~~~~~~~~~~~~~~~~~~~~~~~~~^
        "tutorial_multiplejobs2.py",
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    ...<2 lines>...
        " I have a message: last",
        ^^^^^^^^^^^^^^^^^^^^^^^^^^
    )
    ^
  File 
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_toil/build/toil/test/docs/scriptsTest.py",
 line 69, in checkExpectedPattern
    self.assertNotEqual(n, None, 
f"Pattern:\n{expectedPattern}\nOutput:\n{outerr}")
    
~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.13/unittest/case.py", line 916, in assertNotEqual
    raise self.failureException(msg)
AssertionError: None == None : Pattern:
Hello world, I have a message: first.*Hello world, I have a message: second or 
third.*Hello world, I have a message: second or third.*Hello world, I have a 
message: last
Output:
 [2025-03-18T22:31:59+0000] [MainThread] [I] [toil] Running Toil version 
8.0.0-d2ae0ea9ab49f238670dbf6aafd20de7afdd8514 on host r7a-large-1742336662.
[2025-03-18T22:31:59+0000] [MainThread] [I] [toil.realtimeLogger] Starting 
real-time logging.
[2025-03-18T22:31:59+0000] [MainThread] [I] [toil.leader] Issued job 
'helloWorld' kind-helloWorld/instance-wbr44ccg v1 with job batch system ID: 1 
and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
[2025-03-18T22:32:00+0000] [MainThread] [I] [toil.leader] 0 jobs are running, 0 
jobs are issued and waiting to run
[2025-03-18T22:32:00+0000] [MainThread] [I] [toil.leader] Issued job 
'helloWorld' kind-helloWorld/instance-wtisg9p4 v1 with job batch system ID: 2 
and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
[2025-03-18T22:32:00+0000] [MainThread] [I] [toil.leader] Issued job 
'helloWorld' kind-helloWorld/instance-xgldiemx v1 with job batch system ID: 3 
and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
[2025-03-18T22:32:00+0000] [Thread-4 (statsAndLoggingAggregator)] [I] 
[toil.statsAndLogging] Got message from job at time 03-18-2025 22:32:00: Hello 
world, I have a message: first
[2025-03-18T22:32:00+0000] [MainThread] [I] [toil.leader] Issued job 
'helloWorld' kind-helloWorld/instance-_78gogeg v1 with job batch system ID: 4 
and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
[2025-03-18T22:32:00+0000] [Thread-4 (statsAndLoggingAggregator)] [I] 
[toil.statsAndLogging] Got message from job at time 03-18-2025 22:32:00: Hello 
world, I have a message: second or third
[2025-03-18T22:32:00+0000] [Thread-4 (statsAndLoggingAggregator)] [I] 
[toil.statsAndLogging] Got message from job at time 03-18-2025 22:32:00: Hello 
world, I have a message: last
[2025-03-18T22:32:00+0000] [Thread-4 (statsAndLoggingAggregator)] [I] 
[toil.statsAndLogging] Got message from job at time 03-18-2025 22:32:00: Hello 
world, I have a message: second or third
[2025-03-18T22:32:03+0000] [MainThread] [I] [toil.jobStores.abstractJobStore] 
Importing input 
file:///<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_toil/build/succeeded.log...
[2025-03-18T22:32:03+0000] [MainThread] [I] [toil.leader] Finished toil run 
successfully.
[2025-03-18T22:32:03+0000] [MainThread] [I] [toil.realtimeLogger] Stopping 
real-time logging server.
[2025-03-18T22:32:04+0000] [MainThread] [I] [toil.realtimeLogger] Joining 
real-time logging server thread.
[2025-03-18T22:32:04+0000] [MainThread] [I] [toil.common] Successfully deleted 
the job store: 
FileJobStore(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_toil/build/my-jobstore)

---------------------------- Captured stdout setup -----------------------------


[TEST] toil.test.docs.scriptsTest.ToilDocumentationTest:testMultiplejobs2 (Mar 
18 2025 15:31:59:460967 PDT)


___________________ ToilDocumentationTest.testMultiplejobs3 ____________________
[gw0] linux -- Python 3.13.2 /usr/bin/python3.13
Traceback (most recent call last):
  File "/usr/lib/python3.13/unittest/case.py", line 58, in testPartExecutor
    yield
  File "/usr/lib/python3.13/unittest/case.py", line 651, in run
    self._callTestMethod(testMethod)
    ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^
  File "/usr/lib/python3.13/unittest/case.py", line 606, in _callTestMethod
    if method() is not None:
       ~~~~~~^^
  File 
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_toil/build/toil/test/docs/scriptsTest.py",
 line 128, in testMultiplejobs3
    self.checkExpectedPattern(
    ~~~~~~~~~~~~~~~~~~~~~~~~~^
        "tutorial_multiplejobs3.py",
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    ...<2 lines>...
        " I have a message: last",
        ^^^^^^^^^^^^^^^^^^^^^^^^^^
    )
    ^
  File 
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_toil/build/toil/test/docs/scriptsTest.py",
 line 69, in checkExpectedPattern
    self.assertNotEqual(n, None, 
f"Pattern:\n{expectedPattern}\nOutput:\n{outerr}")
    
~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.13/unittest/case.py", line 916, in assertNotEqual
    raise self.failureException(msg)
AssertionError: None == None : Pattern:
Hello world, I have a message: first.*Hello world, I have a message: second or 
third.*Hello world, I have a message: second or third.*Hello world, I have a 
message: last
Output:
 [2025-03-18T22:32:04+0000] [MainThread] [I] [toil] Running Toil version 
8.0.0-d2ae0ea9ab49f238670dbf6aafd20de7afdd8514 on host r7a-large-1742336662.
[2025-03-18T22:32:04+0000] [MainThread] [I] [toil.realtimeLogger] Starting 
real-time logging.
[2025-03-18T22:32:04+0000] [MainThread] [I] [toil.leader] Issued job 
'helloWorld' kind-helloWorld/instance-u78n90zp v1 with job batch system ID: 1 
and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
[2025-03-18T22:32:04+0000] [MainThread] [I] [toil.leader] 0 jobs are running, 0 
jobs are issued and waiting to run
[2025-03-18T22:32:04+0000] [MainThread] [I] [toil.leader] Issued job 
'helloWorld' kind-helloWorld/instance-2ue8hd1p v1 with job batch system ID: 2 
and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
[2025-03-18T22:32:04+0000] [MainThread] [I] [toil.leader] Issued job 
'helloWorld' kind-helloWorld/instance-hb3amypk v1 with job batch system ID: 3 
and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
[2025-03-18T22:32:04+0000] [Thread-4 (statsAndLoggingAggregator)] [I] 
[toil.statsAndLogging] Got message from job at time 03-18-2025 22:32:04: Hello 
world, I have a message: first
[2025-03-18T22:32:05+0000] [MainThread] [I] [toil.leader] Issued job 
'helloWorld' kind-helloWorld/instance-h_doum1e v1 with job batch system ID: 4 
and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
[2025-03-18T22:32:05+0000] [Thread-4 (statsAndLoggingAggregator)] [I] 
[toil.statsAndLogging] Got message from job at time 03-18-2025 22:32:05: Hello 
world, I have a message: second or third
[2025-03-18T22:32:05+0000] [Thread-4 (statsAndLoggingAggregator)] [I] 
[toil.statsAndLogging] Got message from job at time 03-18-2025 22:32:05: Hello 
world, I have a message: last
[2025-03-18T22:32:05+0000] [Thread-4 (statsAndLoggingAggregator)] [I] 
[toil.statsAndLogging] Got message from job at time 03-18-2025 22:32:05: Hello 
world, I have a message: second or third
[2025-03-18T22:32:10+0000] [MainThread] [I] [toil.jobStores.abstractJobStore] 
Importing input 
file:///<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_toil/build/succeeded.log...
[2025-03-18T22:32:10+0000] [MainThread] [I] [toil.leader] Finished toil run 
successfully.
[2025-03-18T22:32:10+0000] [MainThread] [I] [toil.realtimeLogger] Stopping 
real-time logging server.
[2025-03-18T22:32:10+0000] [MainThread] [I] [toil.realtimeLogger] Joining 
real-time logging server thread.
[2025-03-18T22:32:10+0000] [MainThread] [I] [toil.common] Successfully deleted 
the job store: 
FileJobStore(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_toil/build/my-jobstore)

---------------------------- Captured stdout setup -----------------------------


[TEST] toil.test.docs.scriptsTest.ToilDocumentationTest:testMultiplejobs3 (Mar 
18 2025 15:32:04:251091 PDT)


=========================== short test summary info ============================
FAILED toil/test/docs/scriptsTest.py::ToilDocumentationTest::testMultiplejobs - 
AssertionError: None == None : Pattern:
Hello world, I have a message: first.*Hello world, I have a message: second or 
third.*Hello world, I have a message: second or third.*Hello world, I have a 
message: last
Output:
 [2025-03-18T22:31:54+0000] [MainThread] [I] [toil] Running Toil version 
8.0.0-d2ae0ea9ab49f238670dbf6aafd20de7afdd8514 on host r7a-large-1742336662.
[2025-03-18T22:31:54+0000] [MainThread] [I] [toil.realtimeLogger] Starting 
real-time logging.
[2025-03-18T22:31:54+0000] [MainThread] [I] [toil.leader] Issued job 
'helloWorld' kind-helloWorld/instance-2iw95dbs v1 with job batch system ID: 1 
and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
[2025-03-18T22:31:55+0000] [MainThread] [I] [toil.leader] 0 jobs are running, 0 
jobs are issued and waiting to run
[2025-03-18T22:31:55+0000] [MainThread] [I] [toil.leader] Issued job 
'helloWorld' kind-helloWorld/instance-juwonxuo v1 with job batch system ID: 2 
and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
[2025-03-18T22:31:55+0000] [MainThread] [I] [toil.leader] Issued job 
'helloWorld' kind-helloWorld/instance-gjlf17gr v1 with job batch system ID: 3 
and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
[2025-03-18T22:31:55+0000] [Thread-4 (statsAndLoggingAggregator)] [I] 
[toil.statsAndLogging] Got message from job at time 03-18-2025 22:31:55: Hello 
world, I have a message: first
[2025-03-18T22:31:55+0000] [MainThread] [I] [toil.leader] Issued job 
'helloWorld' kind-helloWorld/instance-9c_gnx81 v1 with job batch system ID: 4 
and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
[2025-03-18T22:31:55+0000] [Thread-4 (statsAndLoggingAggregator)] [I] 
[toil.statsAndLogging] Got message from job at time 03-18-2025 22:31:55: Hello 
world, I have a message: last
[2025-03-18T22:31:55+0000] [Thread-4 (statsAndLoggingAggregator)] [I] 
[toil.statsAndLogging] Got message from job at time 03-18-2025 22:31:55: Hello 
world, I have a message: second or third
[2025-03-18T22:31:55+0000] [Thread-4 (statsAndLoggingAggregator)] [I] 
[toil.statsAndLogging] Got message from job at time 03-18-2025 22:31:55: Hello 
world, I have a message: second or third
[2025-03-18T22:31:58+0000] [MainThread] [I] [toil.jobStores.abstractJobStore] 
Importing input 
file:///<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_toil/build/succeeded.log...
[2025-03-18T22:31:58+0000] [MainThread] [I] [toil.leader] Finished toil run 
successfully.
[2025-03-18T22:31:58+0000] [MainThread] [I] [toil.realtimeLogger] Stopping 
real-time logging server.
[2025-03-18T22:31:59+0000] [MainThread] [I] [toil.realtimeLogger] Joining 
real-time logging server thread.
[2025-03-18T22:31:59+0000] [MainThread] [I] [toil.common] Successfully deleted 
the job store: 
FileJobStore(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_toil/build/my-jobstore)
FAILED toil/test/docs/scriptsTest.py::ToilDocumentationTest::testMultiplejobs2 
- AssertionError: None == None : Pattern:
Hello world, I have a message: first.*Hello world, I have a message: second or 
third.*Hello world, I have a message: second or third.*Hello world, I have a 
message: last
Output:
 [2025-03-18T22:31:59+0000] [MainThread] [I] [toil] Running Toil version 
8.0.0-d2ae0ea9ab49f238670dbf6aafd20de7afdd8514 on host r7a-large-1742336662.
[2025-03-18T22:31:59+0000] [MainThread] [I] [toil.realtimeLogger] Starting 
real-time logging.
[2025-03-18T22:31:59+0000] [MainThread] [I] [toil.leader] Issued job 
'helloWorld' kind-helloWorld/instance-wbr44ccg v1 with job batch system ID: 1 
and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
[2025-03-18T22:32:00+0000] [MainThread] [I] [toil.leader] 0 jobs are running, 0 
jobs are issued and waiting to run
[2025-03-18T22:32:00+0000] [MainThread] [I] [toil.leader] Issued job 
'helloWorld' kind-helloWorld/instance-wtisg9p4 v1 with job batch system ID: 2 
and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
[2025-03-18T22:32:00+0000] [MainThread] [I] [toil.leader] Issued job 
'helloWorld' kind-helloWorld/instance-xgldiemx v1 with job batch system ID: 3 
and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
[2025-03-18T22:32:00+0000] [Thread-4 (statsAndLoggingAggregator)] [I] 
[toil.statsAndLogging] Got message from job at time 03-18-2025 22:32:00: Hello 
world, I have a message: first
[2025-03-18T22:32:00+0000] [MainThread] [I] [toil.leader] Issued job 
'helloWorld' kind-helloWorld/instance-_78gogeg v1 with job batch system ID: 4 
and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
[2025-03-18T22:32:00+0000] [Thread-4 (statsAndLoggingAggregator)] [I] 
[toil.statsAndLogging] Got message from job at time 03-18-2025 22:32:00: Hello 
world, I have a message: second or third
[2025-03-18T22:32:00+0000] [Thread-4 (statsAndLoggingAggregator)] [I] 
[toil.statsAndLogging] Got message from job at time 03-18-2025 22:32:00: Hello 
world, I have a message: last
[2025-03-18T22:32:00+0000] [Thread-4 (statsAndLoggingAggregator)] [I] 
[toil.statsAndLogging] Got message from job at time 03-18-2025 22:32:00: Hello 
world, I have a message: second or third
[2025-03-18T22:32:03+0000] [MainThread] [I] [toil.jobStores.abstractJobStore] 
Importing input 
file:///<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_toil/build/succeeded.log...
[2025-03-18T22:32:03+0000] [MainThread] [I] [toil.leader] Finished toil run 
successfully.
[2025-03-18T22:32:03+0000] [MainThread] [I] [toil.realtimeLogger] Stopping 
real-time logging server.
[2025-03-18T22:32:04+0000] [MainThread] [I] [toil.realtimeLogger] Joining 
real-time logging server thread.
[2025-03-18T22:32:04+0000] [MainThread] [I] [toil.common] Successfully deleted 
the job store: 
FileJobStore(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_toil/build/my-jobstore)
FAILED toil/test/docs/scriptsTest.py::ToilDocumentationTest::testMultiplejobs3 
- AssertionError: None == None : Pattern:
Hello world, I have a message: first.*Hello world, I have a message: second or 
third.*Hello world, I have a message: second or third.*Hello world, I have a 
message: last
Output:
 [2025-03-18T22:32:04+0000] [MainThread] [I] [toil] Running Toil version 
8.0.0-d2ae0ea9ab49f238670dbf6aafd20de7afdd8514 on host r7a-large-1742336662.
[2025-03-18T22:32:04+0000] [MainThread] [I] [toil.realtimeLogger] Starting 
real-time logging.
[2025-03-18T22:32:04+0000] [MainThread] [I] [toil.leader] Issued job 
'helloWorld' kind-helloWorld/instance-u78n90zp v1 with job batch system ID: 1 
and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
[2025-03-18T22:32:04+0000] [MainThread] [I] [toil.leader] 0 jobs are running, 0 
jobs are issued and waiting to run
[2025-03-18T22:32:04+0000] [MainThread] [I] [toil.leader] Issued job 
'helloWorld' kind-helloWorld/instance-2ue8hd1p v1 with job batch system ID: 2 
and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
[2025-03-18T22:32:04+0000] [MainThread] [I] [toil.leader] Issued job 
'helloWorld' kind-helloWorld/instance-hb3amypk v1 with job batch system ID: 3 
and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
[2025-03-18T22:32:04+0000] [Thread-4 (statsAndLoggingAggregator)] [I] 
[toil.statsAndLogging] Got message from job at time 03-18-2025 22:32:04: Hello 
world, I have a message: first
[2025-03-18T22:32:05+0000] [MainThread] [I] [toil.leader] Issued job 
'helloWorld' kind-helloWorld/instance-h_doum1e v1 with job batch system ID: 4 
and disk: 2.0 Gi, memory: 2.0 Gi, cores: 1, accelerators: [], preemptible: False
[2025-03-18T22:32:05+0000] [Thread-4 (statsAndLoggingAggregator)] [I] 
[toil.statsAndLogging] Got message from job at time 03-18-2025 22:32:05: Hello 
world, I have a message: second or third
[2025-03-18T22:32:05+0000] [Thread-4 (statsAndLoggingAggregator)] [I] 
[toil.statsAndLogging] Got message from job at time 03-18-2025 22:32:05: Hello 
world, I have a message: last
[2025-03-18T22:32:05+0000] [Thread-4 (statsAndLoggingAggregator)] [I] 
[toil.statsAndLogging] Got message from job at time 03-18-2025 22:32:05: Hello 
world, I have a message: second or third
[2025-03-18T22:32:10+0000] [MainThread] [I] [toil.jobStores.abstractJobStore] 
Importing input 
file:///<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_toil/build/succeeded.log...
[2025-03-18T22:32:10+0000] [MainThread] [I] [toil.leader] Finished toil run 
successfully.
[2025-03-18T22:32:10+0000] [MainThread] [I] [toil.realtimeLogger] Stopping 
real-time logging server.
[2025-03-18T22:32:10+0000] [MainThread] [I] [toil.realtimeLogger] Joining 
real-time logging server thread.
[2025-03-18T22:32:10+0000] [MainThread] [I] [toil.common] Successfully deleted 
the job store: 
FileJobStore(/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_toil/build/my-jobstore)
============ 3 failed, 206 passed, 387 skipped in 504.70s (0:08:24) ============
E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_toil/build; python3.13 -m pytest -n 2 
--dist loadscope -vv -W ignore  -k "not (testVirtualEnv or 
DockstoreLookupTest)" --ignore toil/test/lib/aws/test_s3.py --ignore 
toil/test/provisioners/aws/awsProvisionerTest.py --ignore 
toil/test/wdl/wdltoil_test.py --ignore toil/test/cwl/cwlTest.py --ignore 
toil/test/lib/test_ec2.py --ignore toil/test/batchSystems/batchSystemTest.py 
--ignore toil/test/lib/aws/test_iam.py --ignore  
toil/test/provisioners/clusterTest.py --ignore 
toil/test/wdl/wdltoil_test_kubernetes.py --ignore 
toil/test/cactus/test_cactus_integration.py toil/test
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.13 
returned exit code 13
make[1]: *** [debian/rules:36: override_dh_auto_test] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:19: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------

The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:

https://people.debian.org/~sanvila/build-logs/202503/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:toil, so that this is still
visible in the BTS web page for this package.

Thanks.

--- End Message ---

--- Begin Message ---

Source: toil
Source-Version: 8.0.0-2
Done: Michael R. Crusoe <cru...@debian.org>

We believe that the bug you reported is fixed in the latest version of
toil, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1100...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Michael R. Crusoe <cru...@debian.org> (supplier of updated toil package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Wed, 19 Mar 2025 12:41:12 +0100
Source: toil
Architecture: source
Version: 8.0.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@debian.org>
Closes: 1100817
Changes:
 toil (8.0.0-2) unstable; urgency=medium
 .
   * d/watch: mark beta releases as such
   * Skip autopktests on 32-bit architectures
   * d/rules: skip the testMultiplejobs tests, they are flaky during
     parallel execution. Closes: #1100817
Checksums-Sha1:
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 dac2d0ced786494967078dc74b48d2551e1a8cc0 21668 toil_8.0.0-2.debian.tar.xz
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toil_8.0.0-2.dsc
 95d2577cebe5b55da7f9e861de38257c0b618c41038358133d1ad815834b6ecf 21668 
toil_8.0.0-2.debian.tar.xz
 c2947ec5dc2cd40a5d8fba8304045e56661f1e355bfa794857690dda9965543f 8992 
toil_8.0.0-2_source.buildinfo
Files:
 457ffed558c8de8ba851270d44a433c1 2742 net optional toil_8.0.0-2.dsc
 ae5c6fda131368d55235df4e4c692957 21668 net optional toil_8.0.0-2.debian.tar.xz
 0f9ce4441384b913b78adaa17a1248fe 8992 net optional 
toil_8.0.0-2_source.buildinfo

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--- End Message ---