Your message dated Mon, 17 Mar 2025 15:33:51 +0000
with message-id <e1tuctp-00geya...@fasolo.debian.org>
and subject line Bug#1095399: fixed in vitables 3.1.0-1
has caused the Debian Bug report #1095399,
regarding vitables: FTBFS: E AttributeError: module 'numpy' has no attribute
'VisibleDeprecationWarning'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1095399: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1095399
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:vitables
Version: 3.0.3-1
Severity: serious
Tags: ftbfs trixie sid
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --with python3,sphinxdoc --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
pybuild --clean -i python{version} -p 3.13
rm -rf .pybuild/
find . -name \*.pyc -exec rm {} \;
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/vitables.substvars debian/files
rm -fr -- debian/vitables/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path
.\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o
-type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a \( -name autom4te.cache -o -name __pycache__ \)
-prune -exec rm -rf {} + \) \)
debian/rules execute_after_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/make -C doc clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
rm -rf _build/*
rm -f index.rst
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules binary
dh binary --with python3,sphinxdoc --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
pybuild --configure -i python{version} -p 3.13
dh_auto_build -O--buildsystem=pybuild
pybuild --build -i python{version} -p 3.13
I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build"
module
I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation
--wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13
* Building wheel...
Successfully built vitables-3.0.3-py3-none-any.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with
"installer" module
debian/rules execute_after_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/make -C doc html # generate doc/index.rst
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
mkdir -p _build
cp indices/index_html.rst index.rst
sphinx-build -b html -d _build/doctrees . _build/html
Running Sphinx v8.1.3
loading translations [en]... done
making output directory... done
Converting `source_suffix = '.rst'` to `source_suffix = {'.rst':
'restructuredtext'}`.
building [mo]: targets for 0 po files that are out of date
writing output...
building [html]: targets for 9 source files that are out of date
updating environment: [new config] 9 added, 0 changed, 0 removed
reading sources... [ 11%] develop
reading sources... [ 22%] index
reading sources... [ 33%] usersguide-app1
reading sources... [ 44%] usersguide-app2
reading sources... [ 56%] usersguide-ch1
reading sources... [ 67%] usersguide-ch2
reading sources... [ 78%] usersguide-ch3
reading sources... [ 89%] usersguide-ch4
reading sources... [100%] usersguide-ch5
looking for now-outdated files... none found
pickling environment... done
checking consistency... /<<PKGBUILDDIR>>/doc/develop.rst: WARNING: document
isn't included in any toctree
done
preparing documents... done
copying assets...
copying static files...
Writing evaluated template result to
/<<PKGBUILDDIR>>/doc/_build/html/_static/documentation_options.js
Writing evaluated template result to
/<<PKGBUILDDIR>>/doc/_build/html/_static/basic.css
Writing evaluated template result to
/<<PKGBUILDDIR>>/doc/_build/html/_static/language_data.js
Writing evaluated template result to
/<<PKGBUILDDIR>>/doc/_build/html/_static/classic.css
Writing evaluated template result to
/<<PKGBUILDDIR>>/doc/_build/html/_static/sidebar.js
copying static files: done
copying extra files...
copying extra files: done
copying assets: done
writing output... [ 11%] develop
writing output... [ 22%] index
writing output... [ 33%] usersguide-app1
writing output... [ 44%] usersguide-app2
writing output... [ 56%] usersguide-ch1
writing output... [ 67%] usersguide-ch2
writing output... [ 78%] usersguide-ch3
writing output... [ 89%] usersguide-ch4
writing output... [100%] usersguide-ch5
generating indices... genindex done
highlighting module code...
writing additional pages... search done
copying images... [ 10%] images/title_page_plain.png
copying images... [ 20%] images/helpBrowser.png
copying images... [ 30%] images/mainWindow.png
copying images... [ 40%] images/treeSymbols.png
copying images... [ 50%] images/browseDataset.png
copying images... [ 60%] images/zoomingCells.png
copying images... [ 70%] images/propertiesDlg.png
copying images... [ 80%] images/newFilteredTable.png
copying images... [ 90%] images/groupCreation.png
copying images... [100%] images/editingUserAttrs.png
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 1 warning.
The HTML pages are in _build/html.
Build finished. The HTML pages are in _build/html.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
/usr/bin/make -C doc qthelp
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
sphinx-build -b qthelp -d _build/doctrees . _build/qthelp
Running Sphinx v8.1.3
loading translations [en]... done
making output directory... done
Converting `source_suffix = '.rst'` to `source_suffix = {'.rst':
'restructuredtext'}`.
loading pickled environment... The configuration has changed (4 options:
'qthelp_basename', 'qthelp_namespace', 'qthelp_theme', 'qthelp_theme_options')
done
building [mo]: targets for 0 po files that are out of date
writing output...
building [qthelp]: targets for 9 source files that are out of date
updating environment: 0 added, 0 changed, 0 removed
reading sources...
looking for now-outdated files... none found
preparing documents... done
copying assets...
copying static files...
Writing evaluated template result to
/<<PKGBUILDDIR>>/doc/_build/qthelp/_static/documentation_options.js
Writing evaluated template result to
/<<PKGBUILDDIR>>/doc/_build/qthelp/_static/basic.css
Writing evaluated template result to
/<<PKGBUILDDIR>>/doc/_build/qthelp/_static/language_data.js
Writing evaluated template result to
/<<PKGBUILDDIR>>/doc/_build/qthelp/_static/nonav.css
copying static files: done
copying extra files...
copying extra files: done
copying assets: done
writing output... [ 11%] develop
writing output... [ 22%] index
writing output... [ 33%] usersguide-app1
writing output... [ 44%] usersguide-app2
writing output... [ 56%] usersguide-ch1
writing output... [ 67%] usersguide-ch2
writing output... [ 78%] usersguide-ch3
writing output... [ 89%] usersguide-ch4
writing output... [100%] usersguide-ch5
generating indices... genindex done
highlighting module code...
writing additional pages... done
copying images... [ 10%] images/title_page_plain.png
copying images... [ 20%] images/helpBrowser.png
copying images... [ 30%] images/mainWindow.png
copying images... [ 40%] images/treeSymbols.png
copying images... [ 50%] images/browseDataset.png
copying images... [ 60%] images/zoomingCells.png
copying images... [ 70%] images/propertiesDlg.png
copying images... [ 80%] images/newFilteredTable.png
copying images... [ 90%] images/groupCreation.png
copying images... [100%] images/editingUserAttrs.png
writing project file...
writing collection project file...
build succeeded.
You can now run "qcollectiongenerator" with the .qhcp project file in
_build/qthelp, like this:
$ qcollectiongenerator _build/qthelp/ViTablesUsersGuide.qhcp
To view the help file:
$ assistant -collectionFile _build/qthelp/ViTablesUsersGuide.qhc
Build finished; now you can run qcollectiongenerator with the .qhcp project
file in _build/qthelp, like this:
# qcollectiongenerator _build/qthelp/ViTablesUsersGuide.qhcp
To view the help file:
# assistant -collectionFile _build/qthelp/ViTablesUsersGuide.qhc
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
cd doc/_build && rm -r html && mv qthelp html && rm html/_static/*.js
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -O--buildsystem=pybuild
pybuild --test --test-pytest -i python{version} -p 3.13
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build;
python3.13 -m pytest tests
ImportError while loading conftest
'/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/tests/conftest.py'.
tests/conftest.py:16: in <module>
import vitables.vtapp
vitables/vtapp.py:55: in <module>
import vitables.csv.import_csv as importcsv
vitables/csv/import_csv.py:65: in <module>
import vitables.csv.csvutils as csvutils
vitables/csv/csvutils.py:39: in <module>
warnings.filterwarnings("ignore", category=numpy.VisibleDeprecationWarning)
/usr/lib/python3/dist-packages/numpy/__init__.py:414: in __getattr__
raise AttributeError("module {!r} has no attribute "
E AttributeError: module 'numpy' has no attribute 'VisibleDeprecationWarning'
E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=4: cd
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build; python3.13 -m pytest tests
rm -fr -- /tmp/dh-xdg-rundir-x5kAEwlH
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.13
returned exit code 13
make: *** [debian/rules:10: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202502/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:vitables, so that this is still
visible in the BTS web page for this package.
Thanks.
--- End Message ---
--- Begin Message ---
Source: vitables
Source-Version: 3.1.0-1
Done: Picca Frédéric-Emmanuel <pi...@debian.org>
We believe that the bug you reported is fixed in the latest version of
vitables, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1095...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Picca Frédéric-Emmanuel <pi...@debian.org> (supplier of updated vitables
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 17 Mar 2025 15:59:48 +0100
Source: vitables
Architecture: source
Version: 3.1.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Picca Frédéric-Emmanuel <pi...@debian.org>
Closes: 1095399
Changes:
vitables (3.1.0-1) unstable; urgency=medium
.
[ Stuart Prescott ]
* Fix typo in changelog closes
.
[ Picca Frédéric-Emmanuel ]
* New upstream version 3.1.0
* Bug fix: "FTBFS: E AttributeError: module 'numpy' has no
attribute 'VisibleDeprecationWarning'", thanks to Santiago
Vila (Closes: #1095399).
Checksums-Sha1:
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Files:
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vitables_3.1.0-1.debian.tar.xz
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