Your message dated Mon, 17 Mar 2025 13:20:30 +0000
with message-id <e1tuaom-00g1qj...@fasolo.debian.org>
and subject line Bug#1096208: fixed in dipy 1.11.0-1
has caused the Debian Bug report #1096208,
regarding dipy: fails tests with scipy 1.15
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1096208: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1096208
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: dipy
Version: 1.10.0-2
Severity: normal
dipy is failing tests with scipy 1.15 from experimental
e.g.
https://ci.debian.net/packages/d/dipy/unstable/amd64/57839450/
1756s FAILED reconst/tests/test_csdeconv.py::test_odfdeconv - AssertionError:
1756s FAILED reconst/tests/test_csdeconv.py::test_default_lambda_csdmodel -
Asserti...
1756s FAILED reconst/tests/test_shm.py::test_real_sym_sh_mrtrix -
AssertionError:
1756s FAILED reconst/tests/test_shm.py::test_real_sym_sh_basis -
AssertionError:
1756s FAILED reconst/tests/test_shm.py::test_real_sh_descoteaux1 -
AssertionError:
1756s FAILED reconst/tests/test_shm.py::test_real_sh_tournier - AssertionError:
1756s FAILED reconst/tests/test_shm.py::test_real_sh_descoteaux2 -
AssertionError:
1756s FAILED
tracking/tests/test_streamline.py::test_set_number_of_points_memory_leaks
1756s FAILED tracking/tests/test_streamline.py::test_length_memory_leaks -
Assertio...
1756s = 9 failed, 823 passed, 169 skipped, 42 deselected, 7741897 warnings in
1597.26s (0:26:37) =
1751s ________________________________ test_odfdeconv
________________________________
1751s
1751s def test_odfdeconv():
1751s SNR = 100
1751s S0 = 1
1751s
1751s _, fbvals, fbvecs = get_fnames(name="small_64D")
1751s bvals, bvecs = read_bvals_bvecs(fbvals, fbvecs)
1751s gtab = gradient_table(bvals, bvecs=bvecs)
1751s mevals = np.array(([0.0015, 0.0003, 0.0003], [0.0015, 0.0003,
0.0003]))
1751s
1751s angles = [(0, 0), (90, 0)]
1751s S, _ = multi_tensor(gtab, mevals, S0=S0, angles=angles,
fractions=[50, 50], snr=SNR)
1751s
1751s sphere = get_sphere(name="symmetric362")
1751s
1751s odf_gt = multi_tensor_odf(sphere.vertices, mevals, angles, [50,
50])
1751s
1751s e1 = 15.0
1751s e2 = 3.0
1751s ratio = e2 / e1
1751s
1751s with warnings.catch_warnings():
1751s warnings.filterwarnings(
1751s "ignore",
1751s message=descoteaux07_legacy_msg,
1751s category=PendingDeprecationWarning,
1751s )
1751s csd = ConstrainedSDTModel(gtab, ratio, reg_sphere=None)
1751s
1751s csd_fit = csd.fit(S)
1751s with warnings.catch_warnings():
1751s warnings.filterwarnings(
1751s "ignore",
1751s message=descoteaux07_legacy_msg,
1751s category=PendingDeprecationWarning,
1751s )
1751s fodf = csd_fit.odf(sphere)
1751s
1751s directions, _, _ = peak_directions(odf_gt, sphere)
1751s directions2, _, _ = peak_directions(fodf, sphere)
1751s
1751s ang_sim = angular_similarity(directions, directions2)
1751s
1751s assert_equal(ang_sim > 1.9, True)
1751s
1751s assert_equal(directions.shape[0], 2)
1751s assert_equal(directions2.shape[0], 2)
1751s
1751s with warnings.catch_warnings(record=True) as w:
1751s warnings.simplefilter("always",
category=PendingDeprecationWarning)
1751s
1751s ConstrainedSDTModel(gtab, ratio, sh_order_max=10)
1751s w_count = len(w)
1751s # A warning is expected from the ConstrainedSDTModel
constructor
1751s # and additional warnings should be raised where legacy SH
bases
1751s # are used
1751s assert_equal(w_count > 1, True)
1751s
1751s with warnings.catch_warnings(record=True) as w:
1751s warnings.simplefilter("always",
category=PendingDeprecationWarning)
1751s
1751s ConstrainedSDTModel(gtab, ratio, sh_order_max=8)
1751s # Test that the warning from ConstrainedSDTModel
1751s # constructor is no more raised
1751s > assert_equal(len(w) == w_count - 1, True)
1751s E AssertionError:
1751s E Items are not equal:
1751s E ACTUAL: False
1751s E DESIRED: True
1751s
1751s /usr/lib/python3/dist-packages/dipy/reconst/tests/test_csdeconv.py:391:
AssertionError
--- End Message ---
--- Begin Message ---
Source: dipy
Source-Version: 1.11.0-1
Done: Michael R. Crusoe <cru...@debian.org>
We believe that the bug you reported is fixed in the latest version of
dipy, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1096...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <cru...@debian.org> (supplier of updated dipy package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 17 Mar 2025 14:13:33 +0100
Source: dipy
Architecture: source
Version: 1.11.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@debian.org>
Closes: 1096208
Changes:
dipy (1.11.0-1) unstable; urgency=medium
.
* Team upload.
* New upstream version. Closes: #1096208
* Standards-Version: 4.7.2 (routine-update)
* Refreshed patches. Removed several applied upstream.
* Updated the lists of tests to skip due to internet usage
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--- End Message ---
