Your message dated Sun, 16 Feb 2025 12:06:07 +0000 with message-id <e1tjdpt-00bhrp...@fasolo.debian.org> and subject line Bug#1095338: fixed in diamond-aligner 2.1.9-2 has caused the Debian Bug report #1095338, regarding diamond-aligner: FTBFS: collect2: fatal error: cannot find 'ld' to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1095338: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1095338 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:diamond-aligner Version: 2.1.9-1 Severity: serious Tags: ftbfs trixie sid Dear maintainer: During a rebuild of all packages in unstable, your package failed to build: -------------------------------------------------------------------------------- [...] debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/<<PKGBUILDDIR>>' dh_auto_configure -- -DCMAKE_BUILD_TYPE=Release cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE=Release .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument <min> value. Or, use the <min>...<max> syntax to tell CMake that the project requires at least <min> but has been updated to work with policies introduced by <max> or earlier. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - failed -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc - broken CMake Error at /usr/share/cmake-3.31/Modules/CMakeTestCCompiler.cmake:67 (message): The C compiler "/usr/bin/cc" is not able to compile a simple test program. It fails with the following output: Change Dir: '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/CMakeScratch/TryCompile-PvCHcV' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile cmTC_5569c/fast gmake[2]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/CMakeScratch/TryCompile-PvCHcV' /usr/bin/gmake -f CMakeFiles/cmTC_5569c.dir/build.make CMakeFiles/cmTC_5569c.dir/build gmake[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/CMakeScratch/TryCompile-PvCHcV' Building C object CMakeFiles/cmTC_5569c.dir/testCCompiler.c.o /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/cmTC_5569c.dir/testCCompiler.c.o -c /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/CMakeScratch/TryCompile-PvCHcV/testCCompiler.c Linking C executable cmTC_5569c /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_5569c.dir/link.txt --verbose=1 collect2: fatal error: cannot find âldâ compilation terminated. /usr/bin/cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/cmTC_5569c.dir/testCCompiler.c.o -o cmTC_5569c gmake[3]: *** [CMakeFiles/cmTC_5569c.dir/build.make:102: cmTC_5569c] Error 1 gmake[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/CMakeScratch/TryCompile-PvCHcV' gmake[2]: *** [Makefile:134: cmTC_5569c/fast] Error 2 gmake[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/CMakeScratch/TryCompile-PvCHcV' CMake will not be able to correctly generate this project. 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If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202502/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you could not reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:diamond-aligner, so that this is still visible in the BTS web page for this package. Thanks.
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--- Begin Message ---Source: diamond-aligner Source-Version: 2.1.9-2 Done: Étienne Mollier <emoll...@debian.org> We believe that the bug you reported is fixed in the latest version of diamond-aligner, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1095...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Étienne Mollier <emoll...@debian.org> (supplier of updated diamond-aligner package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Sun, 16 Feb 2025 11:26:11 +0100 Source: diamond-aligner Architecture: source Version: 2.1.9-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Étienne Mollier <emoll...@debian.org> Closes: 1095338 Changes: diamond-aligner (2.1.9-2) unstable; urgency=medium . * Team upload. . [ Andreas Tille ] * Exclude i386 build from Salsa CI . [ Étienne Mollier ] * d/rules: remove use of ld.gold. ld.gold is deprecated and not part of binutils anymore, causing diamond-aligner to fail to build from source. Thanks to Michael R. Crusoe (Closes: #1095338) * d/control: declare compliance to standards version 4.7.0. Checksums-Sha1: 0175f0d10b31f61ffceb57ee016d4e5ad41ca274 2324 diamond-aligner_2.1.9-2.dsc 6c3f8fad3f0e817584aba948186d9d8f6434afcc 129100 diamond-aligner_2.1.9-2.debian.tar.xz Checksums-Sha256: 8ec00101053cd9c70d75daf47fe7178e74b51c9308601ed8090bab2113582b40 2324 diamond-aligner_2.1.9-2.dsc 133feba8391da54faca59f84c27d99fbab83e1abf864dcf703a76074c8e59b19 129100 diamond-aligner_2.1.9-2.debian.tar.xz Files: 60d3c654ce64797e91b296e7727ab728 2324 science optional diamond-aligner_2.1.9-2.dsc 4dec1c1d7fea2c365d19e00b55981e9f 129100 science optional diamond-aligner_2.1.9-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmex0B4UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrbKRAAtc7+YlQh5aQxQqRWP+wrHvl5410D hOy6L7C2p/toyiS//OzL7y1BACQsr3WMHR9m4MER41cXXuNKnfwwsCxyLHDjiYR0 PgvaI4uFCG+kBnf5giAysj5iwZjd4LBRZfyqQcTZ6TRY6yscIwnRjW3nQtFiDMK1 HZK9DNUD+QwElICPVPr2yRmwhtCRtt9U7rWadzgzcU6W36ejR49gMhF4cWm+OARP cc8Bfi3/2isgSPgYiy8TEQGru+vZPKBKjZ4W9BPpt9WHe7GosaZDH/teK1pgZL1l uBHNrPgiYqvM2aAyQfvyvuGKnV4QevI8qlHBB8qNe1XQLY7FY34oEtylAx05l5d/ NSukeREpxmOOwtSY6SojU8KFzegNyXPqJgzrkL+cj5QtDqUNC0HQLtjTVfIW6DFU I8seK5skA6JNwAXIiCIA6K+fHQO2u3glD4br4lUDsI2Cj1CVBElpVhi7QaLDg78q ow56f7+7KU/2lQnv3jTM1/XWN8xVp8pFParHVpDhB3IU4QLrZv8jpbLnS1n0uKfZ dqLeRfJJX3PDwKdQIzViyQbEh6MUFtrkO7Uid9TMXOx4zGSmGS4R9xJ9qXLyGnDZ tUMWWNDNhagrPtYmzd/eNgKl5+gZL9iJKpMQeshFhxvaNg8CvGni2wgTEGQvucUe ejT2XwN9CAjqcko= =s05s -----END PGP SIGNATURE-----
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