Bug#1095373: marked as done (python-mrcz: FTBFS: AttributeError: module 'numpy' has no attribute 'product')

Debian Bug Tracking System Sat, 08 Feb 2025 13:15:25 -0800

Your message dated Sat, 08 Feb 2025 21:09:59 +0000
with message-id <e1tgs5p-0084fw...@fasolo.debian.org>
and subject line Bug#1095373: fixed in python-mrcz 0.5.7-1
has caused the Debian Bug report #1095373,
regarding python-mrcz: FTBFS: AttributeError: module 'numpy' has no attribute 
'product'
to be marked as done.


This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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immediately.)


-- 
1095373: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1095373
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

--- Begin Message ---

Package: src:python-mrcz
Version: 0.5.6-2
Severity: serious
Tags: ftbfs trixie sid

Dear maintainer:

During a rebuild of all packages in unstable, your package failed to build:

--------------------------------------------------------------------------------
[...]
 debian/rules clean
dh clean --with python3 --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:311: python3.12 setup.py clean 
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build' (and everything 
under it)
'build/bdist.linux-x86_64' does not exist -- can't clean it
'build/scripts-3.12' does not exist -- can't clean it
I: pybuild base:311: python3.13 setup.py clean 
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build' (and everything 
under it)
'build/bdist.linux-x86_64' does not exist -- can't clean it
'build/scripts-3.13' does not exist -- can't clean it
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary
dh binary --with python3 --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:311: python3.12 setup.py config 
running config
I: pybuild base:311: python3.13 setup.py config 
running config
   dh_auto_build -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3.12 setup.py build 
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz
copying mrcz/ioMRC.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz
copying mrcz/__version__.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz
copying mrcz/ioDM.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz
copying mrcz/__init__.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz
copying mrcz/test_mrcz.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz
copying mrcz/ReliablePy.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz
I: pybuild base:311: /usr/bin/python3 setup.py build 
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz
copying mrcz/ioMRC.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz
copying mrcz/__version__.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz
copying mrcz/ioDM.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz
copying mrcz/__init__.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz
copying mrcz/test_mrcz.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz
copying mrcz/ReliablePy.py -> 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz
   dh_auto_test -O--buildsystem=pybuild
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build; 
python3.12 -m unittest discover -v 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/ioMRC.py:219: 
SyntaxWarning: invalid escape sequence '\m'
  '''
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/ioMRC.py:555: 
SyntaxWarning: invalid escape sequence '\A'
  if header['pixelunits'] == u'\\AA' or header['pixelunits'] == u'\AA':
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/ioMRC.py:557: 
SyntaxWarning: invalid escape sequence '\m'
  elif header['pixelunits'] == u'\mum':
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/ioMRC.py:605: 
SyntaxWarning: invalid escape sequence '\m'
  '''
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/ioMRC.py:1050: 
SyntaxWarning: invalid escape sequence '\A'
  if header['pixelunits'] == '\\AA' or header['pixelunits'] == '\AA':
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/ioMRC.py:1052: 
SyntaxWarning: invalid escape sequence '\m'
  elif header['pixelunits'] == '\mum':
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py:66: 
SyntaxWarning: invalid escape sequence '\A'
  pixelsize=pixelsize, pixelunits=u'\AA',
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py:70: 
SyntaxWarning: invalid escape sequence '\A'
  rereadMage, rereadHeader = mrcz.readMRC(mrcName, pixelunits=u'\AA')
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py:77: 
SyntaxWarning: invalid escape sequence '\A'
  assert(rereadHeader['pixelunits'] == u'\AA')
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py:149: 
SyntaxWarning: invalid escape sequence '\A'
  pixelsize=pixelsize, pixelunits=u'\AA',
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py:153: 
SyntaxWarning: invalid escape sequence '\A'
  rereadMage, rereadHeader = mrcz.readMRC(mrcName, pixelunits=u'\AA')
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py:166: 
SyntaxWarning: invalid escape sequence '\A'
  assert(rereadHeader['pixelunits'] == u'\AA')
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py:178: 
SyntaxWarning: invalid escape sequence '\A'
  pixelsize=pixelsize, pixelunits=u'\AA',
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py:184: 
SyntaxWarning: invalid escape sequence '\A'
  worker = mrcz.asyncReadMRC(mrcName, pixelunits=u'\AA')
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py:198: 
SyntaxWarning: invalid escape sequence '\A'
  assert(rereadHeader['pixelunits'] == u'\AA')
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py:211: 
SyntaxWarning: invalid escape sequence '\A'
  rereadMage, _ = mrcz.readMRC(mrcName, pixelunits=u'\AA')
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py:232: 
SyntaxWarning: invalid escape sequence '\A'
  rereadMage, _ = mrcz.readMRC(mrcName, pixelunits=u'\AA')
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py:251: 
SyntaxWarning: invalid escape sequence '\A'
  rereadMage, _ = mrcz.readMRC(mrcName, pixelunits=u'\AA')
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py:271: 
SyntaxWarning: invalid escape sequence '\A'
  rereadMage, _ = mrcz.readMRC(mrcName, pixelunits=u'\AA')
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py:293: 
SyntaxWarning: invalid escape sequence '\A'
  rereadMage, _ = mrcz.readMRC(mrcName, pixelunits=u'\AA', slices=slices)
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py:311: 
SyntaxWarning: invalid escape sequence '\A'
  rereadMage, _ = mrcz.readMRC(mrcName, pixelunits=u'\AA', slices=slices)
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py:447: 
SyntaxWarning: invalid escape sequence '\A'
  rereadMage, _ = mrcz.readMRC(mrcName, pixelunits=u'\AA')
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py:487: 
SyntaxWarning: invalid escape sequence '\A'
  pixelsize=pixelsize, pixelunits=u'\AA',
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py:494: 
SyntaxWarning: invalid escape sequence '\A'
  rereadMage, rereadHeader = mrcz.readMRC(mrcOutput, pixelunits=u'\AA')
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py:505: 
SyntaxWarning: invalid escape sequence '\A'
  npt.assert_array_equal(rereadHeader['pixelunits'], u'\AA')
test_JSON (mrcz.test_mrcz.PythonMrczTests.test_JSON) ... 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/ioMRC.py:210: 
DeprecationWarning: distutils Version classes are deprecated. Use 
packaging.version instead.
  version = StrictVersion(label)
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/ioMRC.py:540: 
DeprecationWarning: distutils Version classes are deprecated. Use 
packaging.version instead.
  if mrcz_version is not None and mrcz_version < StrictVersion('0.5.0'):
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/ioMRC.py:545: 
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is 
deprecated, and will error in future. Ensure you extract a single element from 
your array before performing this operation. (Deprecated NumPy 1.25.)
  slices = int(np.fromfile(f, dtype=dtype_i4, count=1))
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/ioMRC.py:575: 
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is 
deprecated, and will error in future. Ensure you extract a single element from 
your array before performing this operation. (Deprecated NumPy 1.25.)
  header['extendedBytes'] = int(np.fromfile(f, dtype=dtype_i4, count=1))
ok
test_MRCZ_lz9 (mrcz.test_mrcz.PythonMrczTests.test_MRCZ_lz9) ... ok
test_MRCZ_zstd1 (mrcz.test_mrcz.PythonMrczTests.test_MRCZ_zstd1) ... ok
test_MRC_append (mrcz.test_mrcz.PythonMrczTests.test_MRC_append) ... ERROR
test_MRC_uncompressed (mrcz.test_mrcz.PythonMrczTests.test_MRC_uncompressed) 
... <unknown>:1: SyntaxWarning: invalid escape sequence '\A'
ERROR
test_async (mrcz.test_mrcz.PythonMrczTests.test_async) ... ok
test_cast_array_from_c128 
(mrcz.test_mrcz.PythonMrczTests.test_cast_array_from_c128) ... 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/ioMRC.py:740: 
DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
  logger.warn('Casting {} to `numpy.complex64`'.format(MRCfilename))
Casting /tmp/testMage.mrc to `numpy.complex64`
ok
test_cast_array_from_f64 
(mrcz.test_mrcz.PythonMrczTests.test_cast_array_from_f64) ... 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/ioMRC.py:735: 
DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
  logger.warn('Casting {} to `numpy.float64`'.format(MRCfilename))
Casting /tmp/testMage.mrc to `numpy.float64`
ok
test_cast_list_from_c128 
(mrcz.test_mrcz.PythonMrczTests.test_cast_list_from_c128) ... ok
test_cast_list_from_f64 
(mrcz.test_mrcz.PythonMrczTests.test_cast_list_from_f64) ... ok
test_enum_metadata (mrcz.test_mrcz.PythonMrczTests.test_enum_metadata) ... ERROR
test_list_2d (mrcz.test_mrcz.PythonMrczTests.test_list_2d) ... <unknown>:1: 
SyntaxWarning: invalid escape sequence '\A'
ERROR
test_list_2d_compressed 
(mrcz.test_mrcz.PythonMrczTests.test_list_2d_compressed) ... ok
test_list_3d (mrcz.test_mrcz.PythonMrczTests.test_list_3d) ... <unknown>:1: 
SyntaxWarning: invalid escape sequence '\A'
ERROR
test_list_3d_compressed 
(mrcz.test_mrcz.PythonMrczTests.test_list_3d_compressed) ... ok
test_list_change_output_shape 
(mrcz.test_mrcz.PythonMrczTests.test_list_change_output_shape) ... <unknown>:1: 
SyntaxWarning: invalid escape sequence '\A'
ERROR
test_list_change_output_shape_compressed 
(mrcz.test_mrcz.PythonMrczTests.test_list_change_output_shape_compressed) ... ok
test_numpy_metadata (mrcz.test_mrcz.PythonMrczTests.test_numpy_metadata) ... 
ERROR
test_strided_array (mrcz.test_mrcz.PythonMrczTests.test_strided_array) ... ok

======================================================================
ERROR: test_MRC_append (mrcz.test_mrcz.PythonMrczTests.test_MRC_append)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py", 
line 445, in test_MRC_append
    mrcz.writeMRC(I, mrcName, pixelsize=pixelsize, compressor=None, idx = j)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/ioMRC.py", line 
875, in writeMRC
    offset = idx * np.product(header['dimensions'][1:]) * 
np.dtype(header['dtype']).itemsize
                   ^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 414, in 
__getattr__
    raise AttributeError("module {!r} has no attribute "
AttributeError: module 'numpy' has no attribute 'product'

======================================================================
ERROR: test_MRC_uncompressed 
(mrcz.test_mrcz.PythonMrczTests.test_MRC_uncompressed)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py", 
line 85, in test_MRC_uncompressed
    self.compReadWrite(testMage0, compressor=None)
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py", 
line 70, in compReadWrite
    rereadMage, rereadHeader = mrcz.readMRC(mrcName, pixelunits=u'\AA')
                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/ioMRC.py", line 
346, in readMRC
    image = np.fromfile(f, dtype=header['dtype'], count=np.product(dims))
                                                        ^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 414, in 
__getattr__
    raise AttributeError("module {!r} has no attribute "
AttributeError: module 'numpy' has no attribute 'product'

======================================================================
ERROR: test_enum_metadata (mrcz.test_mrcz.PythonMrczTests.test_enum_metadata)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py", 
line 429, in test_enum_metadata
    re_mage, re_meta = mrcz.readMRC(mrcName)
                       ^^^^^^^^^^^^^^^^^^^^^
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/ioMRC.py", line 
346, in readMRC
    image = np.fromfile(f, dtype=header['dtype'], count=np.product(dims))
                                                        ^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 414, in 
__getattr__
    raise AttributeError("module {!r} has no attribute "
AttributeError: module 'numpy' has no attribute 'product'

======================================================================
ERROR: test_list_2d (mrcz.test_mrcz.PythonMrczTests.test_list_2d)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py", 
line 211, in test_list_2d
    rereadMage, _ = mrcz.readMRC(mrcName, pixelunits=u'\AA')
                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/ioMRC.py", line 
334, in readMRC
    frame_size = slices * np.product(dims[1:])
                          ^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 414, in 
__getattr__
    raise AttributeError("module {!r} has no attribute "
AttributeError: module 'numpy' has no attribute 'product'

======================================================================
ERROR: test_list_3d (mrcz.test_mrcz.PythonMrczTests.test_list_3d)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py", 
line 251, in test_list_3d
    rereadMage, _ = mrcz.readMRC(mrcName, pixelunits=u'\AA')
                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/ioMRC.py", line 
334, in readMRC
    frame_size = slices * np.product(dims[1:])
                          ^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 414, in 
__getattr__
    raise AttributeError("module {!r} has no attribute "
AttributeError: module 'numpy' has no attribute 'product'

======================================================================
ERROR: test_list_change_output_shape 
(mrcz.test_mrcz.PythonMrczTests.test_list_change_output_shape)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py", 
line 293, in test_list_change_output_shape
    rereadMage, _ = mrcz.readMRC(mrcName, pixelunits=u'\AA', slices=slices)
                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/ioMRC.py", line 
334, in readMRC
    frame_size = slices * np.product(dims[1:])
                          ^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 414, in 
__getattr__
    raise AttributeError("module {!r} has no attribute "
AttributeError: module 'numpy' has no attribute 'product'

======================================================================
ERROR: test_numpy_metadata (mrcz.test_mrcz.PythonMrczTests.test_numpy_metadata)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/test_mrcz.py", 
line 407, in test_numpy_metadata
    re_mage, re_meta = mrcz.readMRC(mrcName)
                       ^^^^^^^^^^^^^^^^^^^^^
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build/mrcz/ioMRC.py", line 
346, in readMRC
    image = np.fromfile(f, dtype=header['dtype'], count=np.product(dims))
                                                        ^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 414, in 
__getattr__
    raise AttributeError("module {!r} has no attribute "
AttributeError: module 'numpy' has no attribute 'product'

----------------------------------------------------------------------
Ran 19 tests in 0.064s

FAILED (errors=7)
E: pybuild pybuild:389: test: plugin distutils failed with: exit code=1: cd 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mrcz/build; python3.12 -m unittest 
discover -v 
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build; 
python3.13 -m unittest discover -v 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/ioMRC.py:219: 
SyntaxWarning: invalid escape sequence '\m'
  '''
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/ioMRC.py:555: 
SyntaxWarning: invalid escape sequence '\A'
  if header['pixelunits'] == u'\\AA' or header['pixelunits'] == u'\AA':
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/ioMRC.py:557: 
SyntaxWarning: invalid escape sequence '\m'
  elif header['pixelunits'] == u'\mum':
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/ioMRC.py:605: 
SyntaxWarning: invalid escape sequence '\m'
  '''
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/ioMRC.py:1050: 
SyntaxWarning: invalid escape sequence '\A'
  if header['pixelunits'] == '\\AA' or header['pixelunits'] == '\AA':
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/ioMRC.py:1052: 
SyntaxWarning: invalid escape sequence '\m'
  elif header['pixelunits'] == '\mum':
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py:66: 
SyntaxWarning: invalid escape sequence '\A'
  pixelsize=pixelsize, pixelunits=u'\AA',
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py:70: 
SyntaxWarning: invalid escape sequence '\A'
  rereadMage, rereadHeader = mrcz.readMRC(mrcName, pixelunits=u'\AA')
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py:77: 
SyntaxWarning: invalid escape sequence '\A'
  assert(rereadHeader['pixelunits'] == u'\AA')
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py:149: 
SyntaxWarning: invalid escape sequence '\A'
  pixelsize=pixelsize, pixelunits=u'\AA',
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py:153: 
SyntaxWarning: invalid escape sequence '\A'
  rereadMage, rereadHeader = mrcz.readMRC(mrcName, pixelunits=u'\AA')
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py:166: 
SyntaxWarning: invalid escape sequence '\A'
  assert(rereadHeader['pixelunits'] == u'\AA')
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py:178: 
SyntaxWarning: invalid escape sequence '\A'
  pixelsize=pixelsize, pixelunits=u'\AA',
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py:184: 
SyntaxWarning: invalid escape sequence '\A'
  worker = mrcz.asyncReadMRC(mrcName, pixelunits=u'\AA')
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py:198: 
SyntaxWarning: invalid escape sequence '\A'
  assert(rereadHeader['pixelunits'] == u'\AA')
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py:211: 
SyntaxWarning: invalid escape sequence '\A'
  rereadMage, _ = mrcz.readMRC(mrcName, pixelunits=u'\AA')
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py:232: 
SyntaxWarning: invalid escape sequence '\A'
  rereadMage, _ = mrcz.readMRC(mrcName, pixelunits=u'\AA')
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py:251: 
SyntaxWarning: invalid escape sequence '\A'
  rereadMage, _ = mrcz.readMRC(mrcName, pixelunits=u'\AA')
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py:271: 
SyntaxWarning: invalid escape sequence '\A'
  rereadMage, _ = mrcz.readMRC(mrcName, pixelunits=u'\AA')
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py:293: 
SyntaxWarning: invalid escape sequence '\A'
  rereadMage, _ = mrcz.readMRC(mrcName, pixelunits=u'\AA', slices=slices)
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py:311: 
SyntaxWarning: invalid escape sequence '\A'
  rereadMage, _ = mrcz.readMRC(mrcName, pixelunits=u'\AA', slices=slices)
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py:447: 
SyntaxWarning: invalid escape sequence '\A'
  rereadMage, _ = mrcz.readMRC(mrcName, pixelunits=u'\AA')
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py:487: 
SyntaxWarning: invalid escape sequence '\A'
  pixelsize=pixelsize, pixelunits=u'\AA',
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py:494: 
SyntaxWarning: invalid escape sequence '\A'
  rereadMage, rereadHeader = mrcz.readMRC(mrcOutput, pixelunits=u'\AA')
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py:505: 
SyntaxWarning: invalid escape sequence '\A'
  npt.assert_array_equal(rereadHeader['pixelunits'], u'\AA')
test_JSON (mrcz.test_mrcz.PythonMrczTests.test_JSON) ... 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/ioMRC.py:210: 
DeprecationWarning: distutils Version classes are deprecated. Use 
packaging.version instead.
  version = StrictVersion(label)
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/ioMRC.py:540: 
DeprecationWarning: distutils Version classes are deprecated. Use 
packaging.version instead.
  if mrcz_version is not None and mrcz_version < StrictVersion('0.5.0'):
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/ioMRC.py:545: 
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is 
deprecated, and will error in future. Ensure you extract a single element from 
your array before performing this operation. (Deprecated NumPy 1.25.)
  slices = int(np.fromfile(f, dtype=dtype_i4, count=1))
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/ioMRC.py:575: 
DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is 
deprecated, and will error in future. Ensure you extract a single element from 
your array before performing this operation. (Deprecated NumPy 1.25.)
  header['extendedBytes'] = int(np.fromfile(f, dtype=dtype_i4, count=1))
ok
test_MRCZ_lz9 (mrcz.test_mrcz.PythonMrczTests.test_MRCZ_lz9) ... ok
test_MRCZ_zstd1 (mrcz.test_mrcz.PythonMrczTests.test_MRCZ_zstd1) ... ok
test_MRC_append (mrcz.test_mrcz.PythonMrczTests.test_MRC_append) ... ERROR
test_MRC_uncompressed (mrcz.test_mrcz.PythonMrczTests.test_MRC_uncompressed) 
... <unknown>:2: SyntaxWarning: invalid escape sequence '\A'
<unknown>:1: SyntaxWarning: invalid escape sequence '\A'
ERROR
test_async (mrcz.test_mrcz.PythonMrczTests.test_async) ... ok
test_cast_array_from_c128 
(mrcz.test_mrcz.PythonMrczTests.test_cast_array_from_c128) ... 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/ioMRC.py:740: 
DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
  logger.warn('Casting {} to `numpy.complex64`'.format(MRCfilename))
Casting /tmp/testMage.mrc to `numpy.complex64`
ok
test_cast_array_from_f64 
(mrcz.test_mrcz.PythonMrczTests.test_cast_array_from_f64) ... 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/ioMRC.py:735: 
DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
  logger.warn('Casting {} to `numpy.float64`'.format(MRCfilename))
Casting /tmp/testMage.mrc to `numpy.float64`
ok
test_cast_list_from_c128 
(mrcz.test_mrcz.PythonMrczTests.test_cast_list_from_c128) ... ok
test_cast_list_from_f64 
(mrcz.test_mrcz.PythonMrczTests.test_cast_list_from_f64) ... ok
test_enum_metadata (mrcz.test_mrcz.PythonMrczTests.test_enum_metadata) ... ERROR
test_list_2d (mrcz.test_mrcz.PythonMrczTests.test_list_2d) ... <unknown>:2: 
SyntaxWarning: invalid escape sequence '\A'
<unknown>:1: SyntaxWarning: invalid escape sequence '\A'
ERROR
test_list_2d_compressed 
(mrcz.test_mrcz.PythonMrczTests.test_list_2d_compressed) ... ok
test_list_3d (mrcz.test_mrcz.PythonMrczTests.test_list_3d) ... <unknown>:2: 
SyntaxWarning: invalid escape sequence '\A'
<unknown>:1: SyntaxWarning: invalid escape sequence '\A'
ERROR
test_list_3d_compressed 
(mrcz.test_mrcz.PythonMrczTests.test_list_3d_compressed) ... ok
test_list_change_output_shape 
(mrcz.test_mrcz.PythonMrczTests.test_list_change_output_shape) ... <unknown>:2: 
SyntaxWarning: invalid escape sequence '\A'
<unknown>:1: SyntaxWarning: invalid escape sequence '\A'
ERROR
test_list_change_output_shape_compressed 
(mrcz.test_mrcz.PythonMrczTests.test_list_change_output_shape_compressed) ... ok
test_numpy_metadata (mrcz.test_mrcz.PythonMrczTests.test_numpy_metadata) ... 
ERROR
test_strided_array (mrcz.test_mrcz.PythonMrczTests.test_strided_array) ... ok

======================================================================
ERROR: test_MRC_append (mrcz.test_mrcz.PythonMrczTests.test_MRC_append)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py", 
line 445, in test_MRC_append
    mrcz.writeMRC(I, mrcName, pixelsize=pixelsize, compressor=None, idx = j)
    ~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/ioMRC.py", line 
875, in writeMRC
    offset = idx * np.product(header['dimensions'][1:]) * 
np.dtype(header['dtype']).itemsize
                   ^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 414, in 
__getattr__
    raise AttributeError("module {!r} has no attribute "
                         "{!r}".format(__name__, attr))
AttributeError: module 'numpy' has no attribute 'product'

======================================================================
ERROR: test_MRC_uncompressed 
(mrcz.test_mrcz.PythonMrczTests.test_MRC_uncompressed)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py", 
line 85, in test_MRC_uncompressed
    self.compReadWrite(testMage0, compressor=None)
    ~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py", 
line 70, in compReadWrite
    rereadMage, rereadHeader = mrcz.readMRC(mrcName, pixelunits=u'\AA')
                               ~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/ioMRC.py", line 
346, in readMRC
    image = np.fromfile(f, dtype=header['dtype'], count=np.product(dims))
                                                        ^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 414, in 
__getattr__
    raise AttributeError("module {!r} has no attribute "
                         "{!r}".format(__name__, attr))
AttributeError: module 'numpy' has no attribute 'product'

======================================================================
ERROR: test_enum_metadata (mrcz.test_mrcz.PythonMrczTests.test_enum_metadata)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py", 
line 429, in test_enum_metadata
    re_mage, re_meta = mrcz.readMRC(mrcName)
                       ~~~~~~~~~~~~^^^^^^^^^
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/ioMRC.py", line 
346, in readMRC
    image = np.fromfile(f, dtype=header['dtype'], count=np.product(dims))
                                                        ^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 414, in 
__getattr__
    raise AttributeError("module {!r} has no attribute "
                         "{!r}".format(__name__, attr))
AttributeError: module 'numpy' has no attribute 'product'

======================================================================
ERROR: test_list_2d (mrcz.test_mrcz.PythonMrczTests.test_list_2d)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py", 
line 211, in test_list_2d
    rereadMage, _ = mrcz.readMRC(mrcName, pixelunits=u'\AA')
                    ~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/ioMRC.py", line 
334, in readMRC
    frame_size = slices * np.product(dims[1:])
                          ^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 414, in 
__getattr__
    raise AttributeError("module {!r} has no attribute "
                         "{!r}".format(__name__, attr))
AttributeError: module 'numpy' has no attribute 'product'

======================================================================
ERROR: test_list_3d (mrcz.test_mrcz.PythonMrczTests.test_list_3d)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py", 
line 251, in test_list_3d
    rereadMage, _ = mrcz.readMRC(mrcName, pixelunits=u'\AA')
                    ~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/ioMRC.py", line 
334, in readMRC
    frame_size = slices * np.product(dims[1:])
                          ^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 414, in 
__getattr__
    raise AttributeError("module {!r} has no attribute "
                         "{!r}".format(__name__, attr))
AttributeError: module 'numpy' has no attribute 'product'

======================================================================
ERROR: test_list_change_output_shape 
(mrcz.test_mrcz.PythonMrczTests.test_list_change_output_shape)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py", 
line 293, in test_list_change_output_shape
    rereadMage, _ = mrcz.readMRC(mrcName, pixelunits=u'\AA', slices=slices)
                    ~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/ioMRC.py", line 
334, in readMRC
    frame_size = slices * np.product(dims[1:])
                          ^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 414, in 
__getattr__
    raise AttributeError("module {!r} has no attribute "
                         "{!r}".format(__name__, attr))
AttributeError: module 'numpy' has no attribute 'product'

======================================================================
ERROR: test_numpy_metadata (mrcz.test_mrcz.PythonMrczTests.test_numpy_metadata)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/test_mrcz.py", 
line 407, in test_numpy_metadata
    re_mage, re_meta = mrcz.readMRC(mrcName)
                       ~~~~~~~~~~~~^^^^^^^^^
  File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build/mrcz/ioMRC.py", line 
346, in readMRC
    image = np.fromfile(f, dtype=header['dtype'], count=np.product(dims))
                                                        ^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 414, in 
__getattr__
    raise AttributeError("module {!r} has no attribute "
                         "{!r}".format(__name__, attr))
AttributeError: module 'numpy' has no attribute 'product'

----------------------------------------------------------------------
Ran 19 tests in 0.046s

FAILED (errors=7)
E: pybuild pybuild:389: test: plugin distutils failed with: exit code=1: cd 
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_mrcz/build; python3.13 -m unittest 
discover -v 
dh_auto_test: error: pybuild --test -i python{version} -p "3.12 3.13" returned 
exit code 13
make: *** [debian/rules:7: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------

The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:

https://people.debian.org/~sanvila/build-logs/202502/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:python-mrcz, so that this is still
visible in the BTS web page for this package.

Thanks.

--- End Message ---

--- Begin Message ---

Source: python-mrcz
Source-Version: 0.5.7-1
Done: Colin Watson <cjwat...@debian.org>

We believe that the bug you reported is fixed in the latest version of
python-mrcz, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1095...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Colin Watson <cjwat...@debian.org> (supplier of updated python-mrcz package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Sat, 08 Feb 2025 20:51:18 +0000
Source: python-mrcz
Architecture: source
Version: 0.5.7-1
Distribution: unstable
Urgency: medium
Maintainer: Debian PaN Maintainers 
<debian-pan-maintain...@alioth-lists.debian.net>
Changed-By: Colin Watson <cjwat...@debian.org>
Closes: 1095373
Changes:
 python-mrcz (0.5.7-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream release:
     - Rename np.product to np.prod (closes: #1095373).
   * Explicitly depend on python3-setuptools, for distutils.version.
   * Use HTTPS in Homepage field.
   * Use pybuild-plugin-pyproject.
   * Use dh-sequence-python3.
   * Enable autopkgtest-pkg-pybuild.
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 98897f4cfbee03f5bbebda9bab00f7f48d1a740f 40206 python-mrcz_0.5.7.orig.tar.gz
 a36aaa72465e48cb2eb29ebdf35fb3af4a957409 2532 python-mrcz_0.5.7-1.debian.tar.xz
Checksums-Sha256:
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python-mrcz_0.5.7-1.dsc
 77aa30bcd81afb5382f6b76598226bee69f407415c871cbbd03eb4f63abdb658 40206 
python-mrcz_0.5.7.orig.tar.gz
 ffdd8c0112ba13c396f4b6fd15f1437f410ab73af4814b0236b9743718c1036d 2532 
python-mrcz_0.5.7-1.debian.tar.xz
Files:
 7f89ea5e1bcd8769f5b992104ed39dd2 2278 python optional python-mrcz_0.5.7-1.dsc
 366811194fb69484e476b5ecb099f99d 40206 python optional 
python-mrcz_0.5.7.orig.tar.gz
 5aa28c409f8c0aaf7c2e0af209cab63d 2532 python optional 
python-mrcz_0.5.7-1.debian.tar.xz

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--- End Message ---

Bug#1095373: marked as done (python-mrcz: FTBFS: AttributeError: module 'numpy' has no attribute 'product')

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