Your message dated Wed, 22 Jan 2025 23:50:23 +0000
with message-id <e1takuj-00aljk...@fasolo.debian.org>
and subject line Bug#1092749: fixed in kineticstools
0.6.1+git20220223.1326a4d+dfsg-5
has caused the Debian Bug report #1092749,
regarding Autopkgtests fail with Python 3.13: ipdSummary output changed
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1092749: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1092749
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: kineticstools
Version: 0.6.1+git20220223.1326a4d+dfsg-3
Severity: serious
https://ci.debian.net/packages/k/kineticstools/testing/amd64/56313367/
$ ipdSummary
usage: ipdSummary [-h] [--version] [--log-file LOG_FILE]
- [--log-level {DEBUG,INFO,WARNING,ERROR,CRITICAL} | --debug
| --quiet | -v]
- --reference REFERENCE [--gff GFF] [--csv CSV]
+ [--log-level {DEBUG,INFO,WARNING,ERROR,CRITICAL} | --debug
|
+ --quiet | -v] --reference REFERENCE [--gff GFF] [--csv
CSV]
[--bigwig BIGWIG] [--numWorkers NUMWORKERS]
[--pvalue PVALUE] [--maxLength MAXLENGTH]
[--identify IDENTIFY] [--methylFraction] [--outfile
OUTFILE]
-- System Information:
Debian Release: trixie/sid
APT prefers unstable-debug
APT policy: (500, 'unstable-debug'), (500, 'testing-debug'), (500,
'unstable'), (500, 'testing'), (101, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 6.12.8-amd64 (SMP w/16 CPU threads; PREEMPT)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=ru_RU.UTF-8, LC_CTYPE=ru_RU.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
--- End Message ---
--- Begin Message ---
Source: kineticstools
Source-Version: 0.6.1+git20220223.1326a4d+dfsg-5
Done: Emmanuel Arias <eam...@debian.org>
We believe that the bug you reported is fixed in the latest version of
kineticstools, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1092...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Emmanuel Arias <eam...@debian.org> (supplier of updated kineticstools package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 22 Jan 2025 18:39:57 -0300
Source: kineticstools
Architecture: source
Version: 0.6.1+git20220223.1326a4d+dfsg-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Emmanuel Arias <eam...@debian.org>
Closes: 1092749
Changes:
kineticstools (0.6.1+git20220223.1326a4d+dfsg-5) unstable; urgency=medium
.
* Team upload.
* d/patches/remove-pkg-resources.patch: Add patch to replace the usages of
pkg_resources with importlib.resources.
- Thanks Vladimir Petko for the patch.
* d/t/control: disable cram autopkgtests. detection_bam* tests are already
disabled due to the missing data, version.t test fails due to the
different usage formatting in python 3.13 (Closes: #1092749).
- Thanks Vladimir Petko for the patch.
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