Your message dated Mon, 20 Jan 2025 16:51:50 +0000
with message-id <e1tzv0a-00gold...@fasolo.debian.org>
and subject line Bug#1078159: fixed in r-cran-rstan 2.32.5-3
has caused the Debian Bug report #1078159,
regarding r-cran-bayestestr: autopkgtest regression in testing
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1078159: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1078159
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: r-cran-bayestestr
Version: 0.13.2-1
Severity: serious
User: debian...@lists.debian.org
Usertags: regression
Hi Maintainer
Sometime around 2024-07-04, r-cran-bayestestr's autopkgtest regressed
in testing [1]. I've copied what I hope is the relevant part of the
log in unstable [2] (which seems more helpful) below.
Regards
Graham
[1] https://ci.debian.net/packages/r/r-cran-bayestestr/testing/amd64/
[2] https://ci.debian.net/packages/r/r-cran-bayestestr/unstable/amd64/
77s ══ Failed tests
════════════════════════════════════════════════════════════════
77s ── Error ('test-rope_range.R:34:3'): rope_range
────────────────────────────────
77s Error in `.fun(model_code = .x1)`: Boost not found; call
install.packages('BH')
77s Backtrace:
77s ▆
77s 1. ├─base::suppressWarnings(...) at test-rope_range.R:34:3
77s 2. │ └─base::withCallingHandlers(...)
77s 3. └─brms::brm(mpg ~ wt + gear, data = mtcars, iter = 300)
77s 4. └─brms::do_call(compile_model, compile_args)
77s 5. └─brms:::eval2(call, envir = args, enclos = envir)
77s 6. └─base::eval(expr, envir, ...)
77s 7. └─base::eval(expr, envir, ...)
77s 8. └─brms (local) .fun(...)
77s 9. └─brms (local) .compile_model(model, ...)
77s 10. ├─brms:::eval_silent(...)
77s 11. │ └─base::eval(expr, envir)
77s 12. │ └─base::eval(expr, envir)
77s 13. └─brms::do_call(rstan::stan_model, args)
77s 14. └─brms:::eval2(call, envir = args, enclos = envir)
77s 15. └─base::eval(expr, envir, ...)
77s 16. └─base::eval(expr, envir, ...)
77s 17. └─rstan (local) .fun(model_code = .x1)
77s ── Error ('test-rope_range.R:45:3'): rope_range (multivariate)
─────────────────
77s Error in `.fun(model_code = .x1)`: Boost not found; call
install.packages('BH')
77s Backtrace:
77s ▆
77s 1. ├─base::suppressWarnings(...) at test-rope_range.R:45:3
77s 2. │ └─base::withCallingHandlers(...)
77s 3. └─brms::brm(...)
77s 4. └─brms::do_call(compile_model, compile_args)
77s 5. └─brms:::eval2(call, envir = args, enclos = envir)
77s 6. └─base::eval(expr, envir, ...)
77s 7. └─base::eval(expr, envir, ...)
77s 8. └─brms (local) .fun(...)
77s 9. └─brms (local) .compile_model(model, ...)
77s 10. ├─brms:::eval_silent(...)
77s 11. │ └─base::eval(expr, envir)
77s 12. │ └─base::eval(expr, envir)
77s 13. └─brms::do_call(rstan::stan_model, args)
77s 14. └─brms:::eval2(call, envir = args, enclos = envir)
77s 15. └─base::eval(expr, envir, ...)
77s 16. └─base::eval(expr, envir, ...)
77s 17. └─rstan (local) .fun(model_code = .x1)
77s ── Error ('test-rope.R:75:1'): (code run outside of `test_that()`)
─────────────
77s Error in `.fun(model_code = .x1)`: Boost not found; call
install.packages('BH')
77s Backtrace:
77s ▆
77s 1. ├─base::suppressWarnings(...) at test-rope.R:75:1
77s 2. │ └─base::withCallingHandlers(...)
77s 3. └─brms::brm(mpg ~ wt + gear, data = mtcars, iter = 500)
77s 4. └─brms::do_call(compile_model, compile_args)
77s 5. └─brms:::eval2(call, envir = args, enclos = envir)
77s 6. └─base::eval(expr, envir, ...)
77s 7. └─base::eval(expr, envir, ...)
77s 8. └─brms (local) .fun(...)
77s 9. └─brms (local) .compile_model(model, ...)
77s 10. ├─brms:::eval_silent(...)
77s 11. │ └─base::eval(expr, envir)
77s 12. │ └─base::eval(expr, envir)
77s 13. └─brms::do_call(rstan::stan_model, args)
77s 14. └─brms:::eval2(call, envir = args, enclos = envir)
77s 15. └─base::eval(expr, envir, ...)
77s 16. └─base::eval(expr, envir, ...)
77s 17. └─rstan (local) .fun(model_code = .x1)
77s
77s [ FAIL 3 | WARN 390 | SKIP 74 | PASS 182 ]
77s Error: Test failures
78s Execution halted
78s autopkgtest [00:00:03]: test run-unit-test: -----------------------]
--- End Message ---
--- Begin Message ---
Source: r-cran-rstan
Source-Version: 2.32.5-3
Done: Michael R. Crusoe <cru...@debian.org>
We believe that the bug you reported is fixed in the latest version of
r-cran-rstan, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1078...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <cru...@debian.org> (supplier of updated r-cran-rstan package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 20 Jan 2025 16:24:54 +0100
Source: r-cran-rstan
Architecture: source
Version: 2.32.5-3
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <r-pkg-t...@alioth-lists.debian.net>
Changed-By: Michael R. Crusoe <cru...@debian.org>
Closes: 1078159
Changes:
r-cran-rstan (2.32.5-3) unstable; urgency=medium
.
* Team upload
* Adjust patch to hardcode correct location for the boost headers.
Closes: #1078159
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