Your message dated Fri, 29 Nov 2024 22:44:15 +0200 with message-id <Z0onn/PO6bz0RWgU@localhost> and subject line Fixed in OpenMPI has caused the Debian Bug report #1086307, regarding purify: FTBFS: No rule to make target '/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so', needed by 'cpp/purify/libpurify.so.3.1.0'. Stop. to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 1086307: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1086307 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: src:purify Version: 4.1.0-1 Severity: serious Tags: ftbfs Dear maintainer: During a rebuild of all packages in unstable, your package failed to build: -------------------------------------------------------------------------------- [...] debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/<<PKGBUILDDIR>>' cp -r /usr/include/eigen3 . dh_auto_configure -- -DDEB_HOST_MULTIARCH=`dpkg-architecture -qDEB_HOST_MULTIARCH` cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DDEB_HOST_MULTIARCH=x86_64-linux-gnu .. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Building purify in None mode -- Could NOT find Git (missing: GIT_EXECUTABLE) -- Found CFitsIO: /usr/lib/x86_64-linux-gnu/libcfitsio.so (found version "4.5") CMake Warning (dev) at cmake_files/dependencies.cmake:22 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:41 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: system filesystem -- Linking to sopt package in /usr/share/cmake/sopt -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found TIFF: /usr/lib/x86_64-linux-gnu/libtiff.so (found version "4.5.1") -- Configuring done (1.4s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu make[1]: Leaving directory '/<<PKGBUILDDIR>>' dh_auto_build -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make -f cpp/purify/CMakeFiles/libpurify.dir/build.make cpp/purify/CMakeFiles/libpurify.dir/depend make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/cpp/purify /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/cpp/purify /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/cpp/purify/CMakeFiles/libpurify.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make -f cpp/purify/CMakeFiles/libpurify.dir/build.make cpp/purify/CMakeFiles/libpurify.dir/build make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 1%] Building CXX object cpp/purify/CMakeFiles/libpurify.dir/utilities.cc.o cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/cpp/purify && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dlibpurify_EXPORTS -I/<<PKGBUILDDIR>>/cpp/purify/.. -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-command-line-argument -std=c++17 -fPIC -pthread -fopenmp -MD -MT cpp/purify/CMakeFiles/libpurify.dir/utilities.cc.o -MF CMakeFiles/libpurify.dir/utilities.cc.o.d -o CMakeFiles/libpurify.dir/utilities.cc.o -c /<<PKGBUILDDIR>>/cpp/purify/utilities.cc [ 3%] Building CXX object cpp/purify/CMakeFiles/libpurify.dir/pfitsio.cc.o cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/cpp/purify && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dlibpurify_EXPORTS -I/<<PKGBUILDDIR>>/cpp/purify/.. -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-command-line-argument -std=c++17 -fPIC -pthread -fopenmp -MD -MT cpp/purify/CMakeFiles/libpurify.dir/pfitsio.cc.o -MF CMakeFiles/libpurify.dir/pfitsio.cc.o.d -o CMakeFiles/libpurify.dir/pfitsio.cc.o -c /<<PKGBUILDDIR>>/cpp/purify/pfitsio.cc [ 4%] Building CXX object cpp/purify/CMakeFiles/libpurify.dir/logging.cc.o cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/cpp/purify && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dlibpurify_EXPORTS -I/<<PKGBUILDDIR>>/cpp/purify/.. -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-command-line-argument -std=c++17 -fPIC -pthread -fopenmp -MD -MT cpp/purify/CMakeFiles/libpurify.dir/logging.cc.o -MF CMakeFiles/libpurify.dir/logging.cc.o.d -o CMakeFiles/libpurify.dir/logging.cc.o -c /<<PKGBUILDDIR>>/cpp/purify/logging.cc [ 6%] Building CXX object cpp/purify/CMakeFiles/libpurify.dir/kernels.cc.o cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/cpp/purify && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dlibpurify_EXPORTS -I/<<PKGBUILDDIR>>/cpp/purify/.. -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-command-line-argument -std=c++17 -fPIC -pthread -fopenmp -MD -MT cpp/purify/CMakeFiles/libpurify.dir/kernels.cc.o -MF CMakeFiles/libpurify.dir/kernels.cc.o.d -o CMakeFiles/libpurify.dir/kernels.cc.o -c /<<PKGBUILDDIR>>/cpp/purify/kernels.cc [ 7%] Building CXX object cpp/purify/CMakeFiles/libpurify.dir/wproj_utilities.cc.o cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/cpp/purify && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dlibpurify_EXPORTS -I/<<PKGBUILDDIR>>/cpp/purify/.. -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-command-line-argument -std=c++17 -fPIC -pthread -fopenmp -MD -MT cpp/purify/CMakeFiles/libpurify.dir/wproj_utilities.cc.o -MF CMakeFiles/libpurify.dir/wproj_utilities.cc.o.d -o CMakeFiles/libpurify.dir/wproj_utilities.cc.o -c /<<PKGBUILDDIR>>/cpp/purify/wproj_utilities.cc [ 9%] Building CXX object cpp/purify/CMakeFiles/libpurify.dir/operators.cc.o cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/cpp/purify && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dlibpurify_EXPORTS -I/<<PKGBUILDDIR>>/cpp/purify/.. -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-command-line-argument -std=c++17 -fPIC -pthread -fopenmp -MD -MT cpp/purify/CMakeFiles/libpurify.dir/operators.cc.o -MF CMakeFiles/libpurify.dir/operators.cc.o.d -o CMakeFiles/libpurify.dir/operators.cc.o -c /<<PKGBUILDDIR>>/cpp/purify/operators.cc [ 11%] Building CXX object cpp/purify/CMakeFiles/libpurify.dir/uvfits.cc.o cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/cpp/purify && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dlibpurify_EXPORTS -I/<<PKGBUILDDIR>>/cpp/purify/.. -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-command-line-argument -std=c++17 -fPIC -pthread -fopenmp -MD -MT cpp/purify/CMakeFiles/libpurify.dir/wkernel_integration.cc.o -MF CMakeFiles/libpurify.dir/wkernel_integration.cc.o.d -o CMakeFiles/libpurify.dir/wkernel_integration.cc.o -c /<<PKGBUILDDIR>>/cpp/purify/wkernel_integration.cc [ 22%] Building CXX object cpp/purify/CMakeFiles/libpurify.dir/wproj_operators.cc.o cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/cpp/purify && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dlibpurify_EXPORTS -I/<<PKGBUILDDIR>>/cpp/purify/.. -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-command-line-argument -std=c++17 -fPIC -pthread -fopenmp -MD -MT cpp/purify/CMakeFiles/libpurify.dir/mpi_utilities.cc.o -MF CMakeFiles/libpurify.dir/mpi_utilities.cc.o.d -o CMakeFiles/libpurify.dir/mpi_utilities.cc.o -c /<<PKGBUILDDIR>>/cpp/purify/mpi_utilities.cc [ 26%] Building CXX object cpp/purify/CMakeFiles/libpurify.dir/AllToAllSparseVector.cc.o cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/cpp/purify && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dlibpurify_EXPORTS -I/<<PKGBUILDDIR>>/cpp/purify/.. -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-command-line-argument -std=c++17 -fPIC -pthread -fopenmp -MD -MT cpp/purify/CMakeFiles/libpurify.dir/AllToAllSparseVector.cc.o -MF CMakeFiles/libpurify.dir/AllToAllSparseVector.cc.o.d -o CMakeFiles/libpurify.dir/AllToAllSparseVector.cc.o -c /<<PKGBUILDDIR>>/cpp/purify/AllToAllSparseVector.cc [ 28%] Building CXX object cpp/purify/CMakeFiles/libpurify.dir/random_update_factory.cc.o cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/cpp/purify && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -Dlibpurify_EXPORTS -I/<<PKGBUILDDIR>>/cpp/purify/.. -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-command-line-argument -std=c++17 -fPIC -pthread -fopenmp -MD -MT cpp/purify/CMakeFiles/libpurify.dir/random_update_factory.cc.o -MF CMakeFiles/libpurify.dir/random_update_factory.cc.o.d -o CMakeFiles/libpurify.dir/random_update_factory.cc.o -c /<<PKGBUILDDIR>>/cpp/purify/random_update_factory.cc make[3]: *** No rule to make target '/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so', needed by 'cpp/purify/libpurify.so.3.1.0'. Stop. make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make[2]: *** [CMakeFiles/Makefile2:204: cpp/purify/CMakeFiles/libpurify.dir/all] Error 2 make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make[1]: *** [Makefile:149: all] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' dh_auto_build: error: cd obj-x86_64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2 make: *** [debian/rules:10: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- The above is just how the build ends and not necessarily the most relevant part. If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202410/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you could not reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the BTS web page for this package. Thanks.
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--- Begin Message ---cu Adrian
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