Your message dated Sat, 2 Nov 2024 17:29:05 +0100
with message-id <zyztufcw9hp5g...@emlwks999.eu>
and subject line Re: [Debian-med-packaging] Bug#1086364: metabat: FTBFS: 
Package 'bzip2', required by 'htslib', not found
has caused the Debian Bug report #1086364,
regarding metabat: FTBFS: Package 'bzip2', required by 'htslib', not found
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1086364: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1086364
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:metabat
Version: 2.15-4
Severity: serious
Tags: ftbfs

Dear maintainer:

During a rebuild of all packages in unstable, your package failed to build:

--------------------------------------------------------------------------------
[...]
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
   dh_auto_configure
        cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb 
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Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu ..
-- The C compiler identification is GNU 14.2.0
-- The CXX compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
Installing None MetaBAT into /usr
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.3.1")
-- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1")
-- Checking for module 'htslib'
--   Package 'bzip2', required by 'htslib', not found
CMake Error at /usr/share/cmake-3.30/Modules/FindPkgConfig.cmake:645 (message):
  The following required packages were not found:

   - htslib

Call Stack (most recent call first):
  /usr/share/cmake-3.30/Modules/FindPkgConfig.cmake:873 
(_pkg_check_modules_internal)
  CMakeLists.txt:14 (pkg_check_modules)


-- Configuring incomplete, errors occurred!
        cd obj-x86_64-linux-gnu && tail -v -n \+0 CMakeCache.txt
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-DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF 
-DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON 
-DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix 
Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. 
returned exit code 1
make: *** [debian/rules:11: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------

The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:

https://people.debian.org/~sanvila/build-logs/202410/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.

Thanks.

--- End Message ---
--- Begin Message ---
Package: libhts-dev
Version: 1.20+ds-2

Greetings,

The following issue does not occur anymore:

> -- Checking for module 'htslib'
> --   Package 'bzip2', required by 'htslib', not found
> CMake Error at /usr/share/cmake-3.30/Modules/FindPkgConfig.cmake:645 
> (message):
>   The following required packages were not found:
> 
>    - htslib

This looks pretty much related to the added dependency to bzip2
in libhts-dev recently, so closing the issue appropriately.

Have a nice day,  :)
-- 
  .''`.  Étienne Mollier <emoll...@debian.org>
 : :' :  pgp: 8f91 b227 c7d6 f2b1 948c  8236 793c f67e 8f0d 11da
 `. `'   sent from /dev/pts/1, please excuse my verbosity
   `-

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--- End Message ---

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