Your message dated Fri, 31 May 2024 12:49:25 +0000
with message-id <[email protected]>
and subject line Bug#1072115: fixed in coot 1.1.08+dfsg-3
has caused the Debian Bug report #1072115,
regarding ERROR:: Failure to read or parse /usr/share/coot/ui/coot-gtk4.ui
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
1072115: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1072115
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: coot
Version: 1.1.08+dfsg-2
Severity: important
X-Debbugs-Cc: [email protected]
while trying to start coot, I get this error message.
$ coot
INFO:: built with GTK 4.12.5
pdd /usr/share/coot
WARNING:: Coot REFMAC dictionary override COOT_REFMAC_LIB_DIR
/usr/share/coot/lib failed to find the monomer library
WARNING:: COOT_PREFIX set, but no dictionary lib found
WARNING: Failed to read restraints dictionary.
ERROR:: Failure to read or parse /usr/share/coot/ui/coot-gtk4.ui
No function named `on_active_map_ok_button_clicked`.
It would be great if you could add an autopkgtest with timetout in order to
check if the coot GUI could start
something like
#!/bin/sh -ex
# display glxinfo
glxinfo
# Check that the GUI can be started
timeout --preserve-status 10s coot
ec=$?
# do not fail if the exit code is 143, it seems that there is an
# issue with mesa 16/04/2024. (I do not know if this is still required)
if [ $ec -eq 143 ]; then
exit 0;
else
exit $ec;
fi
Cheers
https://salsa.debian.org/science-team/silx/-/blob/master/debian/tests/gui?ref_type=heads
-- System Information:
Debian Release: trixie/sid
APT prefers unstable
APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Kernel: Linux 6.8.9-amd64 (SMP w/4 CPU threads; PREEMPT)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
Versions of packages coot depends on:
ii coot-data 1.1.08+dfsg-2
ii gir1.2-gtk-4.0 4.12.5+ds-6+b1
ii libasound2t64 1.2.11-1+b1
ii libatlas3-base [libblas.so.3] 3.10.3-14
ii libblas3 [libblas.so.3] 3.12.0-3
ii libboost-python1.83.0 [libboost-python1.83.0-py31 1.83.0-3
1]
ii libc6 2.38-11
ii libcairo2 1.18.0-3+b1
ii libclipper2 2.1.20201109-2+b1
ii libcootapi1.1 1.1.08+dfsg-2
ii libcurl3t64-gnutls 8.8.0-1
ii libepoxy0 1.5.10-1+b2
ii libfreetype6 2.13.2+dfsg-1+b4
ii libgcc-s1 14.1.0-1
ii libgdk-pixbuf-2.0-0 2.42.12+dfsg-1
ii libglib2.0-0t64 2.80.2-2
ii libgomp1 14.1.0-1
ii libgraphene-1.0-0 1.10.8-3+b1
ii libgsl27 2.7.1+dfsg-6+b1
ii libgtk-4-1 4.12.5+ds-6+b1
ii libmmdb2-0 2.0.22-1+b1
ii libopenblas0-pthread [libblas.so.3] 0.3.27+ds-2
ii libpango-1.0-0 1.52.2+ds-1
ii libpangocairo-1.0-0 1.52.2+ds-1
ii libpng16-16t64 1.6.43-5
ii libpython3.11t64 3.11.9-1
ii librdkit1 202309.3-3+b1
ii libsqlite3-0 3.45.3-1
ii libssm2 1.4.0-2+b1
ii libstdc++6 14.1.0-1
ii libvorbisfile3 1.3.7-2
ii python3 3.11.8-1
ii python3-gi 3.48.2-1
ii python3-rdkit 202309.3-3+b1
ii refmac-dictionary 5.41-2
ii zlib1g 1:1.3.dfsg+really1.3.1-1
coot recommends no packages.
Versions of packages coot suggests:
pn coot-doc <none>
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: coot
Source-Version: 1.1.08+dfsg-3
Done: Andrius Merkys <[email protected]>
We believe that the bug you reported is fixed in the latest version of
coot, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andrius Merkys <[email protected]> (supplier of updated coot package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 31 May 2024 08:35:55 -0400
Source: coot
Architecture: source
Version: 1.1.08+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Andrius Merkys <[email protected]>
Closes: 1072115
Changes:
coot (1.1.08+dfsg-3) unstable; urgency=medium
.
* Backport upstream commit to fix application crash (Closes: #1072115)
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