Control: tags -1 help
Hi again,
Am Sat, Feb 17, 2024 at 07:31:48PM +0100 schrieb s3v:
> More immediate fix is attached but I guess there is a more elegant
> way by changing the code in _ids_to_keep_from_taxonomy() function.
thanks a lot for all your fixes you provided for Debian Med packages.
There are a few remaining issues, which I would love to ask you step by
step. I found a patch for pyranges[1] which solves all issues but one:
> pd.testing.assert_frame_equal(df1, df2)
E AssertionError: Attributes of DataFrame.iloc[:, 7] (column name="Cluster")
are different
E
E Attribute "dtype" are different
E [left]: int32
E [right]: int64
My attempt to fix this by
+--- a/tests/helpers.py
++++ b/tests/helpers.py
+@@ -57,6 +57,7 @@ def assert_df_equal(df1, df2):
+ print(df2.index)
+ print("index equal", df1.index == df2.index)
+
++ df1["Cluster"] = df1["Cluster"].astype(np.int64)
+ pd.testing.assert_frame_equal(df1, df2)
+
+ pd.options.mode.chained_assignment = "warn"
totally failed and introduced a new series of failures basically saying
> ???
E KeyError: 'Cluster'
pandas/_libs/hashtable_class_helper.pxi:7088: KeyError
Any suggestion how to fix that issue?
Kind regards
Andreas.
[1]
https://salsa.debian.org/med-team/pyranges/-/blob/master/debian/patches/pandas2.0.patch?ref_type=heads
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http://fam-tille.de
