Your message dated Thu, 23 Nov 2023 11:49:03 +0000 with message-id <e1r68cd-006uxm...@fasolo.debian.org> and subject line Bug#1055669: fixed in bcftools 1.18-2 has caused the Debian Bug report #1055669, regarding bcftools: test_vcf_merge failures on armhf: Bus error to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1055669: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1055669 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: bcftools Version: 1.18-1 Severity: serious Tags: ftbfs Justification: ftbfs Control: forwarded -1 https://github.com/samtools/bcftools/issues/2036 Dear Maintainer, bcftools currently ftbfs on armhf due to multiple test_vcf_merge failures with Bus error[1]. I already informed upstream[2]. This bug is mostly to keep track of the issue on Debian side and eventually comment on possible Debian specific workarounds. For the context, there are 44 failure looking typically like: test_vcf_merge: /<<PKGBUILDDIR>>/bcftools merge --no-version -Ob --force-samples -0 /tmp/YVqRgiAYOP/merge.a.vcf.gz /tmp/YVqRgiAYOP/merge.b.vcf.gz /tmp/YVqRgiAYOP/merge.c.vcf.gz | /<<PKGBUILDDIR>>/bcftools view --no-version | grep -v ^##bcftools_ Non-zero status 1 Failed to read from standard input: unknown file type .. failed ... [1]: https://buildd.debian.org/status/fetch.php?pkg=bcftools&arch=armhf&ver=1.18-1&stamp=1699434189&raw=1 [2]: https://github.com/samtools/bcftools/issues/2036 For information, -- .''`. Étienne Mollier <emoll...@debian.org> : :' : gpg: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/2, please excuse my verbosity `- on air: Silent Voices - Humancradlegrave
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--- Begin Message ---Source: bcftools Source-Version: 1.18-2 Done: Étienne Mollier <emoll...@debian.org> We believe that the bug you reported is fixed in the latest version of bcftools, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1055...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Étienne Mollier <emoll...@debian.org> (supplier of updated bcftools package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Thu, 23 Nov 2023 12:01:34 +0100 Source: bcftools Architecture: source Version: 1.18-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Étienne Mollier <emoll...@debian.org> Closes: 1055669 Changes: bcftools (1.18-2) unstable; urgency=medium . * skip_new_test_failing_on_32bit.patch: refresh. * tests-pluginpath.patch: refresh. * fix-bus-error-armhf.patch: new: fix Bus errors. Thanks to Rob Davies (Closes: #1055669) Checksums-Sha1: 3c16a6e336b49e7664b3bb2cdafa7609eb938dc7 2270 bcftools_1.18-2.dsc 0b9ed4789b2084ebb7605702f8923b0cd0b5c860 11828 bcftools_1.18-2.debian.tar.xz Checksums-Sha256: 997d592c4148c573a57dbb81ebac64d73b1a444d2eb4ea126abf00292fb0cbab 2270 bcftools_1.18-2.dsc 400f5f1fb6597fa5f30763df21aca026b026284f3610308c0fe53ae328d9e187 11828 bcftools_1.18-2.debian.tar.xz Files: f66b80c253c2f150a5b426869365fb36 2270 science optional bcftools_1.18-2.dsc bd8588e544280dde67a99335ec9e9c54 11828 science optional bcftools_1.18-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmVfN4kUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqi8RAAgiuGgES2JKfEVeTz4WDN13sBcS/a ZlGVD59akFubxJ9hdXSLMF7mOfkg0A1jde0N+g5Yx8nDJU8S6b6OEOrC05Q3AyuV b6N3+KJMinJv6+N4FXU569u6tNmVbdURXkbU8HOmETDrEOQ7rM/hyhbmSW//uODg 43mZBR0bzIJmUCoZfpfgbtJnYqWomlFwga3q17Ttx6mPxluKNngQYYehXyUEOCje COGPC0XPmwb8rEgnBw0CLJtnnfzMb0j/lZXtAkg/6EAiAUx8SlCHoco5jefyTxVX gf5gwqXaqjJseBk8TpOCHn3p42Bam1Bl28IHb1iZvpLUgQZy2Jqo08F1CDFxf0vd 05Id5LiAwRUd4948l6ZQQkBpwqHUJqsq7mC8Ux630jmaV1Blc6728DOivRntC9VV qMLQFHlXucdX4VZWLHKj51XROVHe4VNJyqz5Qhq89N7aiI5d1tAIs2q7rg2eUu6d S6beUdJWIp/sJlm6e/bfRGBKEOQod6vT6/hxJhiJBnPO+21SAW4L6s10Uw3AzWup M0v+7mNcwxX+Y7V83/GK2Pof1atGTr6AbQ0KvWhoTXCWCibybgtITQBIZHX5cO4e rgZXJI7ok+eJtyhLx7DML+nZuq+0BbnRDwWIfhHy3CY0wT+1UJgFWOfBK/lzdnHt 0gEBI80xt09JUpw= =yQV3 -----END PGP SIGNATURE-----
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