Your message dated Mon, 09 Oct 2023 08:44:07 +0000
with message-id <[email protected]>
and subject line Bug#1053314: fixed in xmds2 3.1.0+dfsg2-5
has caused the Debian Bug report #1053314,
regarding Depends: python3-h5py-mpi without python3-h5py
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1053314: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1053314
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: xmds2
Version: 3.1.0+dfsg2-4
Severity: serious
Justification: debci
xmds2 Depends: python3-h5py-mpi without depending on python3-h5py
python3-h5py-mpi only provides the h5py._debian_h5py_mpi namespace,
not h5py. Hence tests using h5py without specifying _debian_h5py_mpi
fail. This is the case with h5py 3.9.0. (Marking Severity: serious due
to debci failure)
python3-h5py provides the h5py namespace, so if xmds2 strictly needs
the mpi build, but accessing via the generic h5py namespace, then the
Depends should specify both packages
Depends: python3-h5py python3-h5py-mpi
Note there seems to be an inconsistency in the xmds2 package
configuration. It has MPI dependencies (python3-h5py-mpi, also
mpi-default-dev, libfftw3-mpi-dev), but with respect to hdf5 it has
Depends: libhdf5-serial-dev
Should that instead be
Depends: libhdf5-mpi-dev ?
--- End Message ---
--- Begin Message ---
Source: xmds2
Source-Version: 3.1.0+dfsg2-5
Done: Rafael Laboissière <[email protected]>
We believe that the bug you reported is fixed in the latest version of
xmds2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Rafael Laboissière <[email protected]> (supplier of updated xmds2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sun, 08 Oct 2023 14:24:24 -0300
Source: xmds2
Architecture: source
Version: 3.1.0+dfsg2-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team
<[email protected]>
Changed-By: Rafael Laboissière <[email protected]>
Closes: 1053314
Changes:
xmds2 (3.1.0+dfsg2-5) unstable; urgency=medium
.
* Fix dependencies on h5py
+ d/control:
- Build-depend on python3-h5py
- Depend on libhdf5-serial-dev
+ d/p/h5py-always-use-mpi.patch: New patch
Thanks to Drew Parsons for the suggestions and Nilesh Patra for the
discussion. (Closes: #1053314)
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