Your message dated Sat, 26 Aug 2023 11:05:14 +0000 with message-id <e1qzr6q-00edrh...@fasolo.debian.org> and subject line Bug#1050557: fixed in abyss 2.3.7-2 has caused the Debian Bug report #1050557, regarding abyss: FTBFS: error: possibly dangling reference to a temporary [-Werror=dangling-reference] to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1050557: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1050557 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: abyss Version: 2.3.7-1 Severity: serious Tags: ftbfs Justification: fails to build from source (but built successfully in the past) Dear maintainer, abyss fails to build from source. From my build log on amd64: | Making all in Graph | make[4]: Entering directory '/<<PKGBUILDDIR>>/Graph' | g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<<PKGBUILDDIR>> -isystem/usr/lib/x86_64-linux-gnu/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<<PKGBUILDDIR>>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_gc-gc.o `test -f 'gc.cc' || echo './'`gc.cc | g++ -std=c++11 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -Wl,-z,relro -Wl,-z,now -o abyss-gc abyss_gc-gc.o ../Common/libcommon.a -ldl -lm | g++ -std=c++11 -DHAVE_CONFIG_H -I. -I.. -I.. -I../Common -I/<<PKGBUILDDIR>> -isystem/usr/lib/x86_64-linux-gnu/openmpi/include -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/<<PKGBUILDDIR>>/boost_1_56_0 -Wall -Wextra -Werror -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DGTEST_USE_OWN_TR1_TUPLE=0 -c -o abyss_todot-todot.o `test -f 'todot.cc' || echo './'`todot.cc | In file included from GraphIO.h:10, | from todot.cc:9: | GfaIO.h: In instantiation of ‘std::ostream& write_gfa2_edges(std::ostream&, const Graph&, const DistanceEst*) [with Graph = ContigGraph<DirectedGraph<ContigProperties, DistanceEst> >; std::ostream = std::basic_ostream<char>]’: | GfaIO.h:216:25: required from ‘std::ostream& write_gfa2(std::ostream&, Graph&) [with Graph = const ContigGraph<DirectedGraph<ContigProperties, DistanceEst> >; std::ostream = std::basic_ostream<char>]’ | GraphIO.h:37:20: required from ‘std::ostream& write_graph(std::ostream&, const Graph&, const std::string&, const std::string&) [with Graph = ContigGraph<DirectedGraph<ContigProperties, DistanceEst> >; std::ostream = std::basic_ostream<char>; std::string = std::__cxx11::basic_string<char>]’ | todot.cc:186:14: required from here | GfaIO.h:182:27: error: possibly dangling reference to a temporary [-Werror=dangling-reference] | 182 | const EP& ep = get(edge_bundle, g, eit); | | ^~ | GfaIO.h:182:35: note: the temporary was destroyed at the end of the full expression ‘get<ContigProperties, DistanceEst>(boost::edge_bundle, g.ContigGraph<DirectedGraph<ContigProperties, DistanceEst> >::<anonymous>, DirectedGraph<ContigProperties, DistanceEst>::edge_iterator(eit))’ | 182 | const EP& ep = get(edge_bundle, g, eit); | | ~~~^~~~~~~~~~~~~~~~~~~~~ | In file included from GraphIO.h:8: | DotIO.h: In instantiation of ‘void write_edges(std::ostream&, const Graph&, typename boost::graph_traits<Graph>::vertex_descriptor, const EdgeProp*) [with Graph = ContigGraph<DirectedGraph<ContigProperties, DistanceEst> >; EdgeProp = DistanceEst; std::ostream = std::basic_ostream<char>; typename boost::graph_traits<Graph>::vertex_descriptor = ContigNode]’: | DotIO.h:110:14: required from ‘std::ostream& write_dot(std::ostream&, const Graph&, const std::string&) [with Graph = ContigGraph<DirectedGraph<ContigProperties, DistanceEst> >; std::ostream = std::basic_ostream<char>; std::string = std::__cxx11::basic_string<char>]’ | DotIO.h:77:18: required from ‘std::ostream& write_dot(std::ostream&, const Graph&) [with Graph = ContigGraph<DirectedGraph<ContigProperties, DistanceEst> >; std::ostream = std::basic_ostream<char>]’ | DotIO.h:125:26: required from ‘std::ostream& operator<<(std::ostream&, const DotWriter<ContigGraph<DirectedGraph<ContigProperties, DistanceEst> > >&)’ | GraphIO.h:33:14: required from ‘std::ostream& write_graph(std::ostream&, const Graph&, const std::string&, const std::string&) [with Graph = ContigGraph<DirectedGraph<ContigProperties, DistanceEst> >; std::ostream = std::basic_ostream<char>; std::string = std::__cxx11::basic_string<char>]’ | todot.cc:186:14: required from here | DotIO.h:44:43: error: possibly dangling reference to a temporary [-Werror=dangling-reference] | 44 | const edge_property_type& ep = get(edge_bundle, g, e); | | ^~ | DotIO.h:44:51: note: the temporary was destroyed at the end of the full expression ‘get<DirectedGraph<ContigProperties, DistanceEst> >(boost::edge_bundle, (* & g), DirectedGraph<ContigProperties, DistanceEst>::out_edge_iterator(e))’ | 44 | const edge_property_type& ep = get(edge_bundle, g, e); | | ~~~^~~~~~~~~~~~~~~~~~~ | DotIO.h: In instantiation of ‘void write_edges(std::ostream&, const Graph&, typename boost::graph_traits<Graph>::vertex_descriptor, const EdgeProp*) [with Graph = ContigGraph<DirectedGraph<ContigProperties, Distance> >; EdgeProp = Distance; std::ostream = std::basic_ostream<char>; typename boost::graph_traits<Graph>::vertex_descriptor = ContigNode]’: | DotIO.h:110:14: required from ‘std::ostream& write_dot(std::ostream&, const Graph&, const std::string&) [with Graph = ContigGraph<DirectedGraph<ContigProperties, Distance> >; std::ostream = std::basic_ostream<char>; std::string = std::__cxx11::basic_string<char>]’ | DotIO.h:77:18: required from ‘std::ostream& write_dot(std::ostream&, const Graph&) [with Graph = ContigGraph<DirectedGraph<ContigProperties, Distance> >; std::ostream = std::basic_ostream<char>]’ | DotIO.h:125:26: required from ‘std::ostream& operator<<(std::ostream&, const DotWriter<ContigGraph<DirectedGraph<ContigProperties, Distance> > >&)’ | GraphIO.h:33:14: required from ‘std::ostream& write_graph(std::ostream&, const Graph&, const std::string&, const std::string&) [with Graph = ContigGraph<DirectedGraph<ContigProperties, Distance> >; std::ostream = std::basic_ostream<char>; std::string = std::__cxx11::basic_string<char>]’ | todot.cc:191:14: required from here | DotIO.h:44:43: error: possibly dangling reference to a temporary [-Werror=dangling-reference] | 44 | const edge_property_type& ep = get(edge_bundle, g, e); | | ^~ | DotIO.h:44:51: note: the temporary was destroyed at the end of the full expression ‘get<DirectedGraph<ContigProperties, Distance> >(boost::edge_bundle, (* & g), DirectedGraph<ContigProperties, Distance>::out_edge_iterator(e))’ | 44 | const edge_property_type& ep = get(edge_bundle, g, e); | | ~~~^~~~~~~~~~~~~~~~~~~ | cc1plus: all warnings being treated as errors | make[4]: *** [Makefile:465: abyss_todot-todot.o] Error 1 | make[4]: Leaving directory '/<<PKGBUILDDIR>>/Graph' | make[3]: *** [Makefile:488: all-recursive] Error 1 | make[3]: Leaving directory '/<<PKGBUILDDIR>>' | make[2]: *** [Makefile:408: all] Error 2 | make[2]: Leaving directory '/<<PKGBUILDDIR>>' | dh_auto_build: error: make -j1 returned exit code 2 | make[1]: *** [debian/rules:17: override_dh_auto_build] Error 25 | make[1]: Leaving directory '/<<PKGBUILDDIR>>' | make: *** [debian/rules:10: binary-arch] Error 2 | dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 A full build log on riscv64 is also available: https://buildd.debian.org/status/fetch.php?pkg=abyss&arch=riscv64&ver=2.3.7-1&stamp=1693038499&raw=0 Regards Aurelien
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--- Begin Message ---Source: abyss Source-Version: 2.3.7-2 Done: Étienne Mollier <emoll...@debian.org> We believe that the bug you reported is fixed in the latest version of abyss, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1050...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Étienne Mollier <emoll...@debian.org> (supplier of updated abyss package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Sat, 26 Aug 2023 12:20:49 +0200 Source: abyss Architecture: source Version: 2.3.7-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Étienne Mollier <emoll...@debian.org> Closes: 1050557 Changes: abyss (2.3.7-2) unstable; urgency=medium . [ Andreas Tille ] * btllib code is now external . [ Étienne Mollier ] * d/rules: build with -Wno-error=dangling-reference. This fixes build failures with gcc 13. (Closes: #1050557) Checksums-Sha1: 303d4f3f149c97504604fe8ca321f30d139d26f5 2417 abyss_2.3.7-2.dsc 6fa39b3a1f1e708ff7f997392cda014a4bdc3b0b 1497664 abyss_2.3.7-2.debian.tar.xz Checksums-Sha256: 4861957424f56681c801a97f2d795610cc3638b7c80e662ab5861b01b16bec53 2417 abyss_2.3.7-2.dsc fca6435d8f60e6bd123b071b65f8f5b84c917eed10fd8e65eb06819d91f1d73d 1497664 abyss_2.3.7-2.debian.tar.xz Files: f16b6f54165d4781d25427dc28ce7138 2417 science optional abyss_2.3.7-2.dsc 97d768b869dc047869ea6845fa36de1b 1497664 science optional abyss_2.3.7-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmTp2bMUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdoPDw/+JXnsbu12rbZuMyaHzjqg9ndxXf/h FvolV/PtVSQ6TnSHb7ngUwO4j6vsfiyhrbHjFiFYkdCB0juiqJGRmc3Y38pWPEDJ SEnbScHlqC0ugF36bBJsVDgMXdB2OnL0ng65Ap2mNr7MWU1t1eHfYaYpjwD6/LwX TgAu6ie9E22K6Yc926RdR4y2/qtS2e488dYCQ/MXBFFfiMkbalW93U9oh7BR7Xc/ 9mCFijJ6KQxcaZnNs6MISrOTozbctazqsUE2LK9BDYcQlGiH5v94w2iXmJhHr5zt bVJ6b3K2aWieQoTe2evoIwWRC1foOV97K5IAFBiIwXeoApeD8EGfi738L5Sc0UiH sUP25XHwugkqJZ2xX33br7S/UU1pR6lAd8edylTu59Z1uJDbw5pWtjrPuF5IOrHV Wt1dLDhx4bX2QJe5RqPbnt22nItaxIpQSXLOP31HPxoKp6slV77tC6eCutpL4+zI 4JvTFbs2zHR6h7ROA+nOdqfUJ+cTKsQ2zf0iYMwnX9lvLnVyLg2PX5KcfQKGhPPG DNKExNPblqsEwnibL4sBgbItn9GlPCij5h5TGazOEOaf72ErI31UH9NeZ1NK6jXf +8GMTXKUTcyYi5/mUN4UDEB8riGftJAf2L7yXUX8Gy1cHyZ4g3sC5pqEShNTtkrD BwPHNL3L0k2sswY= =MBnh -----END PGP SIGNATURE-----
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