Your message dated Thu, 27 Jul 2023 06:27:03 +0000 with message-id <e1qousl-008mpv...@fasolo.debian.org> and subject line Bug#1042313: fixed in smiles-scripts 0.2.0+dfsg1-5 has caused the Debian Bug report #1042313, regarding smiles-scripts: FTBFS: failed tests to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1042313: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1042313 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: smiles-scripts Version: 0.2.0+dfsg1-4 Severity: serious Justification: FTBFS Tags: trixie sid ftbfs User: lu...@debian.org Usertags: ftbfs-20230726 ftbfs-trixie Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[2]: Entering directory '/<<PKGBUILDDIR>>' > find: ‘externals’: No such file or directory > find: ‘externals’: No such file or directory > find: ‘externals’: No such file or directory > find: ‘externals’: No such file or directory > find: ‘externals’: No such file or directory > find: ‘externals’: No such file or directory > find: ‘externals’: No such file or directory > find: ‘externals’: No such file or directory > find: ‘externals’: No such file or directory > find: ‘externals’: No such file or directory > find: ‘externals’: No such file or directory > find: ‘externals’: No such file or directory > find: ‘externals’: No such file or directory > find: ‘externals’: No such file or directory > find: ‘externals’: No such file or directory > find: ‘externals’: No such file or directory > find: ‘externals’: No such file or directory > find: ‘externals’: No such file or directory > tests/cases/cdkcif2smiles_001.opt: > tests/cases/cdkcif2xyz_001.opt: > tests/cases/cdkdepict-cgi_002.sh: > tests/cases/cdkdepict_002.inp: > tests/cases/cdkdepict_003.opt: > tests/cases/cdkdepict_007.inp: > tests/cases/cdkdepict_021.opt: > tests/cases/cdkrecharge_001.opt: OK > tests/cases/cdkrecharge_002.sh: OK > tests/cases/cdkrecharge_003.opt: OK > OK > tests/cases/cdkrecharge_004.opt: > tests/cases/cdkrecharge_005.opt: OK > tests/cases/cdkrecharge_006.inp: OK > tests/cases/cdkrecharge_007.opt: OK > tests/cases/cdkrecharge_008.inp: OK > tests/cases/cdkrecharge_009.opt: OK > tests/cases/cdkrecharge_010.opt: OK > tests/cases/cdkrecharge_011.opt: OK > OK > tests/cases/cdkrecharge_012.inp: > tests/cases/cdkrecharge_013.inp: OK > tests/cases/cdkrecharge_014.inp: OK > tests/cases/cdkrecharge_015.inp: OK > tests/cases/cdkrecharge_016.sh: OK > tests/cases/cdkrecharge_017.sh: OK > tests/cases/cdkrecharge_018.inp: OK > tests/cases/cdkrecharge_019.inp: OK > tests/cases/cdkrecharge_020.inp: OK > tests/cases/cdksdf2smiles_001.opt: OK > tests/cases/cdksdf2smiles_002.inp: OK > tests/cases/cdksdf2smiles_003.inp: OK > tests/cases/cdksdf2smiles_004.inp: OK > OK > tests/cases/cdksdf2smiles_006.inp: > tests/cases/cdksdf2smiles_008.inp: OK > tests/cases/cml-to-smi_001.inp: OK > tests/cases/cml-to-smi_002.inp: OK > tests/cases/cml-to-smi_003.inp: OK > tests/cases/cml-to-smi_004.inp: OK > tests/cases/cml-to-smi_005.inp: OK > tests/cases/cml-to-smi_006.inp: OK > tests/cases/cml-to-smi_007.inp: FAILED: > 0a1,2 > > cannot represent cis/trans bond between atoms 12 and 8 as there are no > > eligible single bonds nearby > > cannot represent cis/trans bond between atoms 10 and 9 as there are no > > eligible single bonds nearby > tests/cases/cml-to-smi_008.inp: OK > OK > tests/cases/cml-to-smi_009.inp: > tests/cases/sdf-to-smi_001.inp: OK > OK > tests/cases/sdf-to-smi_003.inp: > tests/cases/sdf-to-smi_004.inp: OK > OK > OK > tests/cases/sdf-to-smi_005.inp: OK > OK > tests/cases/sdf-to-smi_006.inp: > tests/cases/sdf-to-smi_007.inp: OK > tests/cases/sdf-to-smi_008.inp: OK > tests/cases/sdf-to-smi_009.inp: > tests/cases/sdf-to-smi_010.inp: > tests/cases/sdf-to-smi_011.inp: OK > tests/cases/sdf-to-smi_012.inp: OK > OK > tests/cases/sdf-to-smi_013.inp: OK > tests/cases/sdf-to-smi_014.inp: OK > tests/cases/sdf-to-smi_015.inp: OK > tests/cases/smi_canonicalise_001.inp: > tests/cases/smi_canonicalise_002.inp: OK > tests/cases/smi_canonicalise_003.inp: OK > tests/cases/smi_canonicalise_004.inp: OK > tests/cases/smi_canonicalise_005.inp: OK > tests/cases/smi_canonicalise_006.inp: OK > tests/cases/smi_canonicalise_007.inp: OK > tests/cases/smi_canonicalise_008.inp: OK > tests/cases/smi_canonicalise_009.inp: OK > tests/cases/smi_canonicalise_010.inp: OK > tests/cases/smi_canonicalise_011.inp: OK > tests/cases/smi_canonicalise_012.inp: OK > tests/cases/smi_canonicalise_013.inp: OK > OK > tests/cases/smi_canonicalise_014.inp: > tests/cases/smi_canonicalise_015.inp: OK > tests/cases/smi_canonicalise_016.inp: OK > tests/cases/smi_canonicalise_017.inp: OK > tests/cases/smi_canonicalise_018.inp: OK > tests/cases/smi_canonicalise_019.inp: OK > tests/cases/smi_canonicalise_020.inp: OK > tests/cases/smi_canonicalise_021.inp: OK > tests/cases/smi_canonicalise_022.inp: OK > tests/cases/smi_canonicalise_023.inp: OK > tests/cases/smi_canonicalise_024.inp: OK > tests/cases/smi_canonicalise_025.inp: OK > tests/cases/smi_canonicalise_026.inp: OK > tests/cases/smi_canonicalise_027.inp: OK > tests/cases/smi_canonicalise_028.inp: OK > tests/cases/smi_canonicalise_029.inp: OK > tests/cases/smi_isomorphism_001.sh: OK > tests/cases/smi_isomorphism_002.sh: OK > tests/cases/smi_isomorphism_003.sh: OK > tests/cases/smi_isomorphism_004.sh: OK > tests/cases/smi_isomorphism_005.sh: OK > tests/cases/smi_isomorphism_006.sh: OK > tests/cases/smi_isomorphism_007.sh: OK > tests/cases/smi_isomorphism_008.sh: OK > tests/cases/smi_isomorphism_009.sh: OK > OK > tests/cases/smi_isomorphism_010.sh: > tests/cases/smi_isomorphism_011.sh: OK > tests/cases/smi_isomorphism_012.sh: OK > tests/cases/smi_isomorphism_013.sh: OK > tests/cases/smi_isomorphism_014.sh: OK > tests/cases/smi_isomorphism_015.sh: OK > tests/cases/smi_isomorphism_016.sh: OK > tests/cases/smi_isomorphism_017.sh: OK > tests/cases/smi_isomorphism_018.sh: OK > tests/cases/smi_isomorphism_019.sh: OK > tests/cases/smi_isomorphism_020.sh: OK > tests/cases/smi_isomorphism_021.sh: OK > tests/cases/smi_isomorphism_022.sh: FAILED: > 1,2d0 > < scripts/smi_isomorphism: -(1) XXXXXXX: 2 tetrahedral chiral center(s) with > less than 4 distinct neighbours were removed. > < scripts/smi_isomorphism: -(1) XXXXXXX: 2 tetrahedral chiral center(s) with > less than 4 distinct neighbours were removed. > tests/cases/smi_isomorphism_023.sh: OK > tests/cases/smi_isomorphism_024.sh: OK > tests/cases/smi_isomorphism_025.sh: OK > tests/cases/smi_isomorphism_026.sh: OK > tests/cases/smi_isomorphism_027.sh: OK > tests/cases/smi_isomorphism_028.sh: OK > tests/cases/smi_isomorphism_029.sh: OK > tests/cases/smi_isomorphism_030.sh: OK > tests/cases/smi_isomorphism_031.sh: OK > tests/cases/smi_isomorphism_032.sh: OK > tests/cases/smi_isomorphism_033.sh: OK > tests/cases/smi_isomorphism_034.sh: OK > tests/cases/smi_parse_001.inp: OK > tests/cases/smi_parse_002.inp: OK > OK > tests/cases/smi_parse_003.sh: OK > OK > OK > OK > OK > OK > OK > make[2]: Leaving directory '/<<PKGBUILDDIR>>' > find tests/outputs -name '*.diff' -a -size +0 | xargs --no-run-if-empty -i > echo FAILED: {} > FAILED: tests/outputs/smi_isomorphism_019.diff > FAILED: tests/outputs/cml-to-smi_003.diff > find tests/outputs -name '*.diff' -a -size +0 | xargs --no-run-if-empty false > # Detect test failures > make[1]: *** [debian/rules:35: override_dh_auto_test] Error 123 The full build log is available from: http://qa-logs.debian.net/2023/07/26/smiles-scripts_0.2.0+dfsg1-4_unstable.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20230726;users=lu...@debian.org or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20230726&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
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--- Begin Message ---Source: smiles-scripts Source-Version: 0.2.0+dfsg1-5 Done: Andrius Merkys <mer...@debian.org> We believe that the bug you reported is fixed in the latest version of smiles-scripts, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1042...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andrius Merkys <mer...@debian.org> (supplier of updated smiles-scripts package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Thu, 27 Jul 2023 01:42:52 -0400 Source: smiles-scripts Architecture: source Version: 0.2.0+dfsg1-5 Distribution: unstable Urgency: medium Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org> Changed-By: Andrius Merkys <mer...@debian.org> Closes: 1042313 Changes: smiles-scripts (0.2.0+dfsg1-5) unstable; urgency=medium . * Add newest reference. * Adjust to changes in Chemistry::OpenSMILES (Closes: #1042313) Checksums-Sha1: 3f9f96c8a08d739da70c6ac7fa5d093b97b25ae9 3004 smiles-scripts_0.2.0+dfsg1-5.dsc 48a2c716a17fd9073f3056c68388e5a9bac1815a 8344 smiles-scripts_0.2.0+dfsg1-5.debian.tar.xz 024cb604d81eedf19950f0c9f2a9c639328d34fd 13538 smiles-scripts_0.2.0+dfsg1-5_source.buildinfo Checksums-Sha256: 72b8c27891bb85e7c9ef60d4e6819d3d8f703676667178ccccf3b00751bd9710 3004 smiles-scripts_0.2.0+dfsg1-5.dsc ba1e1f8060dd1838140237ea6b0bc2c8b90ce9a153552df9384c803d2d6c6048 8344 smiles-scripts_0.2.0+dfsg1-5.debian.tar.xz b2775eebf8469fb1d2e0c952da63ad947ce8742e72ea8d235b1366dd89794731 13538 smiles-scripts_0.2.0+dfsg1-5_source.buildinfo Files: 42509b9178c6bae76bcc431a01ded8ba 3004 science optional smiles-scripts_0.2.0+dfsg1-5.dsc 959979dd0d3baf33413738b4ca10c092 8344 science optional smiles-scripts_0.2.0+dfsg1-5.debian.tar.xz 709e96cf1dd2d2dbcb4639ac8ff080ab 13538 science optional smiles-scripts_0.2.0+dfsg1-5_source.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmTCBXMSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHQo0P9A0fRVHQ0cJT42bfTAEtALvyYaan5Phr BeHgp6OG8hbdjbcNlQX6MI+qhjOJGaHflVzNDWf6lZk6v9A158DwrOmsP+q1oXmD eS4qYGFRVRKcvyK1Kqw0dbWNfxlcuRttr9v6tfqp7T5fYbdgcPHqEhTlVvLN63t2 BOUGrI2c7MXaUO4gouXug8SwVqk4/iKGpFr3iw/5TUE7zzL7rJkq4bjTguUEtyix XsVjUcNKNmj+4oVhintE2C8yqJs1ZMjRD4vqjW8wmWq2vjlM3716BJGOyPSUns9/ sCS5mI03603VGF1qT7yGvMJP1nWzs+0lunm+V9Gsr3DYXBE0o11eUXL4kxEJUfOB e3o/G0huc7vr32GbvdZpdfpJxDJ6OLJo0aG979GFrOwhKGP8gO0OVm7XH5zWbTtu W/SWB1muO18ZRpJRe6Gg6jXvYtmjA9QcFDpi+sN6VtQ4H/ryE/fkW8yjF0r03RVd Hm9vryLjg0X0SpE6yJdt36eziTLCTgggaf2S1HZom4e2q3YG+enBIe7vCUwQl+dR PwHhsO9DyTg4o/p93VA9gxBFtVPdvVDgZdnC3UCJBvZ4KzjQ5q1olNppBDNc67az 0sf2bIMRRRs1/xzSsLCJN84YT+vDVbkLfYS3inlaMWV/o9qQ8nx81LpRz4/HLwzx xRpRtas8mnk= =W/Ve -----END PGP SIGNATURE-----
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