Your message dated Fri, 21 Jul 2023 14:40:51 +0000 with message-id <[email protected]> and subject line Bug#1039633: fixed in r-bioc-bioccheck 1.36.1+dfsg-1 has caused the Debian Bug report #1039633, regarding r-bioc-bioccheck: autopkgtest failure with r-base (4.3.1-1) to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 1039633: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1039633 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Source: r-bioc-bioccheck Version: 1.34.2+dfsg-1 Severity: serious Justification: autopkgtest failure Dear Maintainer, The autopkgtest of your package fails with r-base (4.3.1-1): 209s RUNIT TEST PROTOCOL -- Tue Jun 27 15:46:32 2023 209s *********************************************** 209s Number of test functions: 48 209s Number of deactivated test functions: 3 209s Number of errors: 0 209s Number of failures: 1 209s 209s 209s 1 Test Suite : 209s BiocCheck RUnit Tests - 48 test functions, 0 errors, 1 failure 209s FAILURE in test_checkBBScompatibility: Error in checkTrue(.BiocCheck$getNum("note") == 1, "citation produces note") : 209s Test not TRUE 209s citation produces note 209s DEACTIVATED test_checkExportsAreDocumented: Skip this test, it requires a package non-available in Debian 209s DEACTIVATED test_checkUsageOfDont: Skip this test, it requires a package non-available in Debian 209s DEACTIVATED test_remotesUsage: Skip this test, it requires a package non-available in Debian 209s 209s Test files with failing tests 209s 209s test_BiocCheck.R 209s test_checkBBScompatibility 209s test_checkExportsAreDocumented 209s test_checkUsageOfDont 209s test_remotesUsage 209s 209s 209s Error in BiocGenerics:::testPackage("BiocCheck") : 209s unit tests failed for package BiocCheck https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-bioc-bioccheck/34907238/log.gz Kind Regards, Bas
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--- Begin Message ---Source: r-bioc-bioccheck Source-Version: 1.36.1+dfsg-1 Done: Andreas Tille <[email protected]> We believe that the bug you reported is fixed in the latest version of r-bioc-bioccheck, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <[email protected]> (supplier of updated r-bioc-bioccheck package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Fri, 21 Jul 2023 15:55:25 +0200 Source: r-bioc-bioccheck Architecture: source Version: 1.36.1+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers <[email protected]> Changed-By: Andreas Tille <[email protected]> Closes: 1039633 Changes: r-bioc-bioccheck (1.36.1+dfsg-1) unstable; urgency=medium . * Team upload. * Rebuild against latest version of r-base Closes: #1039633 * New upstream version * Reduce piuparts noise in transitions * Standards-Version: 4.6.2 (routine-update) * dh-update-R to update Build-Depends (routine-update) Checksums-Sha1: ad21caf89cb05fd5a8fdb0c66c7a33cb4fc321c0 2260 r-bioc-bioccheck_1.36.1+dfsg-1.dsc ac0ef1bfee3e4e221644e5ce65eca3bd126d21a8 3987972 r-bioc-bioccheck_1.36.1+dfsg.orig.tar.xz acaffdfe329def743fe79b9fe11a00c4a491b001 5844 r-bioc-bioccheck_1.36.1+dfsg-1.debian.tar.xz b8a6376dd3ae3fccd940aef598c2b15ff3006a57 12574 r-bioc-bioccheck_1.36.1+dfsg-1_amd64.buildinfo Checksums-Sha256: 24fe61e4795fbde7ff318c19bc1dc346d9cded1f876b5a06314f7a8aeff91f3b 2260 r-bioc-bioccheck_1.36.1+dfsg-1.dsc 1b9a70c5284a7388c1a8f5722f3b476676e6128563de831fb20479a274fbe4ec 3987972 r-bioc-bioccheck_1.36.1+dfsg.orig.tar.xz 5b6b6bcc1244f5053355d95099105349f644a4acb4ce67f28b8dd78aa95029bc 5844 r-bioc-bioccheck_1.36.1+dfsg-1.debian.tar.xz 8bbda5e30ba9ebf7e84dc3752c438d6710d6e338640c98cd20275252704f762f 12574 r-bioc-bioccheck_1.36.1+dfsg-1_amd64.buildinfo Files: 36df81c0b18a3e0e061bb9d7d2159b4a 2260 gnu-r optional r-bioc-bioccheck_1.36.1+dfsg-1.dsc 863d7df8a937b56566ba4df1f8ba56ad 3987972 gnu-r optional r-bioc-bioccheck_1.36.1+dfsg.orig.tar.xz d5715b508c7c3fa66888ba5f691d008c 5844 gnu-r optional r-bioc-bioccheck_1.36.1+dfsg-1.debian.tar.xz 66e9d27337935e058d9fadcd3d4fc3c1 12574 gnu-r optional r-bioc-bioccheck_1.36.1+dfsg-1_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmS6jxIRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH+8hAAhmlMBqxPzD5P0fTFN08Oxb3OR6V4qmka SV8oyGskOnPl0WaHvQv/y4m+AcESay6ySRYfeJktjeQKeE+6f/b9ruNuHXpdR0Wh VDjJVLRMn9hBTxSMpnfMq08a+nPGdg3C4TRSvyQ1LBHZ7tbOdYUaLvAWNDximLLn ALVGdUksUrr45701D8H4VP3mVGdV/yUY6wH0Gu4otT/qAaf9iSGO3n7gkKPtwC/i PWrLw5n3BS2XlJmrquU0UXIQdy9gZBzzdW4dcdR30lzNH2rgE61rxqZrz6yXgUTo p+kDeQo8tk5c3n1xTJIqhFrZfOzs0le2V/xNW3xrGYUHOq25H44aNqN/C0DeE3/O CK/FjiIA/zJhTNhh2DuR8NrPmbbAJrA9UHFsX5EeGikIYS29t8joEafqSo8KTw9b ikmZWnuxcfhyH2beYJhGkQzYbFPSjX20GHyzdynECobc5yyEwDkUnKA08T/+Ok4P oroAgyOzeKBzqEAFA3vj/5KB/GcOD++ZzCzxQ5IQN9jAxD5iz7kE2ezP7AUoJgXj Mn/U7bMGGCcRr38QuoMAq+GqTZSyN17tyPP/pU0GbXLdg82JgtcfzbhFZ+fIXkEl tvS55Bsptyh7tC+WxkntkibAq4qEaIMUPOArBPJuFGTblKx6/IVVsmXCbZhpf7+a faoVW1/5los= =ZOkf -----END PGP SIGNATURE-----
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