Your message dated Mon, 28 Nov 2022 22:20:39 +0000 with message-id <e1ozmur-004thc...@fasolo.debian.org> and subject line Bug#1024986: fixed in python-biopython 1.80+dfsg-1 has caused the Debian Bug report #1024986, regarding python-biopython: does not vendor bindings for python3.11 yet to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1024986: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1024986 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: python-biopython Version: 1.79+dfsg-3 Severity: serious X-Debbugs-Cc: debian-...@lists.debian.org Control: block 1024855 by -1 Control: block 1024858 by -1 Hi, biopython in unstable does not vendor bindings for python3.11, due to which augur and busco fail their autopkgtest. Thanks, Nilesh -- System Information: Debian Release: bookworm/sid APT prefers testing APT policy: (990, 'testing') Architecture: amd64 (x86_64) Kernel: Linux 6.0.0-4-amd64 (SMP w/8 CPU threads; PREEMPT) Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE not set Shell: /bin/sh linked to /usr/bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled
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--- Begin Message ---Source: python-biopython Source-Version: 1.80+dfsg-1 Done: Étienne Mollier <emoll...@debian.org> We believe that the bug you reported is fixed in the latest version of python-biopython, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1024...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Étienne Mollier <emoll...@debian.org> (supplier of updated python-biopython package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Mon, 28 Nov 2022 22:19:25 +0100 Source: python-biopython Architecture: source Version: 1.80+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Étienne Mollier <emoll...@debian.org> Closes: 1024855 1024858 1024986 1025014 1025022 Changes: python-biopython (1.80+dfsg-1) unstable; urgency=medium . * Migrate biopython 1.80 from experimental to unstable. Closes: #1024986, #1024858, #1024855, #1025014, #1025022 . python-biopython (1.80+dfsg-1~0exp0) experimental; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Set upstream metadata fields: Security-Contact. * privacy_breach_ie9.patch: refresh. * adjust-test_GraphicsBitmaps.patch: delete; applied upstream. * spelling.patch: delete; applied upstream. * mkdssp4.patch: delete; fixed upstream. * d/control: remove test dependency on problematic packages; muscle 5 wrapping is unsupported upstream, and t_coffee suffers from segmentation faults documented in #1022570 * croak-on-muscle5.patch: add; raise RuntimeError with muscle 5. * d/NEWS: describe incompatibility with muscle 5; also describe possible workarounds. * d/not-installed: add tree1 and other_trees. * d/*.lintian-overrides: refresh override. * debian/python3-biopython.lintian-overrides: override typo; the reported spelling error does not seem to match anything meaningful on the side of the source code. * d/s/lintian-overrides: indicate location of Restriction.md, source of Restriction.html. * d/copyright: bump copyright years. * muscle3.patch: add; default to use muscle3 command if available. This is in preparation of the availability of a dedicated muscle3 package with the explicitly versioned command, since muscle 5 is a very different program but can be installed in parallel. Checksums-Sha1: 7497875e1a1019637cdc401aac14d8b6210d5487 3346 python-biopython_1.80+dfsg-1.dsc 29f76812a17c6cc658f45bf743f077d0af2a7376 19244 python-biopython_1.80+dfsg-1.debian.tar.xz Checksums-Sha256: 6f5bcd65c57666ba9b7df70994f7ee536fa2b5514624d4c5098a4df148af39c1 3346 python-biopython_1.80+dfsg-1.dsc 16edd6ce4bacb06a51b46210a6adde40080fcc4fc4b35c7cb29c5c36945e3745 19244 python-biopython_1.80+dfsg-1.debian.tar.xz Files: 0b4bd816b0c210822949af3fcbbb03ff 3346 python optional python-biopython_1.80+dfsg-1.dsc af1a971c80ba03e3a693fa161695ea00 19244 python optional python-biopython_1.80+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmOFL5AUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqH1hAAsnVeSxkKqKqD1CQ24JqfMhtEdGBU d+fTjo/w2Q9GPqYhZoINNT/1F81ouRL2wREXC/GcyLqF/uhD8mpvzB+s4lbIzuhU Qfr5SZNr/c/e1+FqMZ6CC0JRECnwyMr5shPFQW6yZyJ17z+j1dltaKZfE7q9tMDt H3LMqImw15d/9kxvUu7Mi9PUbnKfltaxopR4w9dSiYbtRQd9C91jDCLlUUPHDqhE wS7+0xUbE2sa3YI4mfrXm1xUJP6Uwf1RHmLiLkhOlUoQ+iT3tYsfKEJAO0ODgKJ0 /7nc13x5ttSxIYrPxjAPIY71Mox+GU8UsfmUqPrs5EcZQ3Rdzz8loh2kG/C/Ts4I utgJao9fAEPEozuvZcjKYProW/SAIw72zFWXUlJGVsTU65wFa/ewTBv+u0W+qYti /1/CCNHZqqxplzizUNjLRz0eoxnVYhHsGpz4MCSio9rBfHLnA0Qb0K76olQBPZUN uOLhNC+drBKan1cwU1nRd10zU5oVcyZrcwgfiSleZ4d+9e7CEbJIxTipbXaP7YfL b+Du9bkX8QiCtAI2Hp0hHdxJDNOD16HfmedJvHkpRfwPjBTHE5kZ1GE0BrAlXxbx EktHpe90m9nI3KaRXpAE+r6HA9fes6X7oZjl8BCU8jO3KCUKc6LUKkO/B6XdIN4Y ShwONDnzUSCM3LY= =IDtN -----END PGP SIGNATURE-----
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