Your message dated Thu, 04 Aug 2022 19:03:54 +0000 with message-id <[email protected]> and subject line Bug#1013080: fixed in dask 2022.02.0+dfsg-1 has caused the Debian Bug report #1013080, regarding dask: incompatibility with scipy 1.8 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 1013080: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1013080 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Source: dask Version: 2022.01.0+dfsg-2 Severity: normal Control: tags -1 patch dask 2022.01 uses a deprecated scipy API and now fails tests with scipy 1.8.1: _____________________________ test_one[chisquare] ______________________________ kind = 'chisquare' @pytest.mark.parametrize( "kind", ["chisquare", "power_divergence", "normaltest", "skewtest", "kurtosistest"] ) def test_one(kind): a = np.random.random(size=30) a_ = da.from_array(a, 3) dask_test = getattr(dask.array.stats, kind) scipy_test = getattr(scipy.stats, kind) > result = dask_test(a_) /usr/lib/python3/dist-packages/dask/array/tests/test_stats.py:56: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3/dist-packages/dask/array/stats.py:136: in chisquare return power_divergence(f_obs, f_exp=f_exp, ddof=ddof, axis=axis, lambda_="pearson") /usr/lib/python3/dist-packages/dask/array/stats.py:144: in power_divergence if lambda_ not in scipy.stats.stats._power_div_lambda_names: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ name = '_power_div_lambda_names' def __getattr__(name): if name not in __all__: > raise AttributeError( "scipy.stats.stats is deprecated and has no attribute " f"{name}. Try looking in scipy.stats instead.") E AttributeError: scipy.stats.stats is deprecated and has no attribute _power_div_lambda_names. Try looking in scipy.stats instead. /usr/lib/python3/dist-packages/scipy/stats/stats.py:54: AttributeError Likewise test_two[chisquare-kwargs4] test_two[power_divergence-kwargs8] test_power_divergence_invalid The incompatibility is fixed in dask 2022.03 (lastest is 2022.6), or apply the patch in PR#8694 https://github.com/dask/dask/pull/8694 -- System Information: Debian Release: bookworm/sid APT prefers unstable APT policy: (500, 'unstable'), (1, 'experimental') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 5.18.0-1-amd64 (SMP w/8 CPU threads; PREEMPT) Kernel taint flags: TAINT_WARN Locale: LANG=en_AU.UTF-8, LC_CTYPE=en_AU.UTF-8 (charmap=UTF-8), LANGUAGE=en_AU:en Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled
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--- Begin Message ---Source: dask Source-Version: 2022.02.0+dfsg-1 Done: Diane Trout <[email protected]> We believe that the bug you reported is fixed in the latest version of dask, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Diane Trout <[email protected]> (supplier of updated dask package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Thu, 04 Aug 2022 11:15:42 -0700 Source: dask Architecture: source Version: 2022.02.0+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Python Team <[email protected]> Changed-By: Diane Trout <[email protected]> Closes: 1013080 Changes: dask (2022.02.0+dfsg-1) unstable; urgency=medium . * New upstream release * Refresh patches * split tests/control Tests-Command: into a separate shell script * Add sphinx-remove-toctree and sphinx-tabs to build-depends * add 32-bit compatibility patch for pandas 1.3 See https://github.com/dask/dask/issues/8169 * Copy conftest.py into test directory for autopkgtests * Add python3-ipython as a build-dependency. - it provides a sphinx formatting extension. * Add patch pytest-futurewarning.patch for compatibility with our pytest * Add scipy-1.8.patch (Closes: #1013080) for Scipy 1.8 compatibility Thanks: Graham Inggs * run autopkgtest on all supported versions * Remove built-using on -doc package Checksums-Sha1: 3d3337818420750c352065d843aa0d07bb915948 3072 dask_2022.02.0+dfsg-1.dsc 514d370bff77e1083799f005275c41c1382ad0fc 4409936 dask_2022.02.0+dfsg.orig.tar.xz 720bf01ff34560fbb600076692486172a43d564a 24800 dask_2022.02.0+dfsg-1.debian.tar.xz bf7e8a2f75257f4e5b8c75f0e412440ecabbeab9 11094 dask_2022.02.0+dfsg-1_amd64.buildinfo Checksums-Sha256: 09f6ae7ec71a27476f8d0989a3ba7295df33130192389a0c079aa9081249f3a4 3072 dask_2022.02.0+dfsg-1.dsc 39b522dbea018d2f8fabfb6af90b96c86595197078d74a8115d82e3cba6783f9 4409936 dask_2022.02.0+dfsg.orig.tar.xz 756335414ff431c5817580f712ecbdd241e2297e9720c42c467b150ce2bbf926 24800 dask_2022.02.0+dfsg-1.debian.tar.xz 96f910c60227d3917f08502d7503bf8ba0f659e02e808ab4622d34152a05b090 11094 dask_2022.02.0+dfsg-1_amd64.buildinfo Files: 4934d959566452da957caec21d4bfc56 3072 python optional dask_2022.02.0+dfsg-1.dsc 0d774015039bafbca571dfcbcc8714c2 4409936 python optional dask_2022.02.0+dfsg.orig.tar.xz bf90e5b471579a428b365e5bdf724c92 24800 python optional dask_2022.02.0+dfsg-1.debian.tar.xz 1400020e732de71d3208eb82c3fc181b 11094 python optional dask_2022.02.0+dfsg-1_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEETQVcMeSBIEX5AQ11mQ04NnM013AFAmLsD/4ACgkQmQ04NnM0 13CG8RAAmdzqBJPk8ylW/V6PO0muEGzKmQIutwU/8jW69z1uODXMTWg/WtGytcUJ FRzmdCi52NrjOsuKty0JLecREDyqioS4fU4EEZEVZ+CaxMFmzeKswu0vo+buPL2j TwJnEtKdpuQa2wOh4a2IZkchfIrsPFoFQ6eVi5cMDOeUL3HifQj/8kqwgZWOLhPg z6emjVNxN+wCdEsy42LRfnq0G3KW7MjysA4q0Bq6lE+fVZHWg3mThDu9R08Esc/f jwlEqZWhMGXMfj3sWvvohmI1hRbVsyqRj0mJqUNoHx+0zjq/Dq1ODc6KvAuGqlc5 BnWILzetEpjT/67RQ6IBeSFSdDFMFZ6kth7Y8X5P1EBnZ9Nm6sRpvNmoIlBpCQep IqubQJyRElhNGn2g2E/CueurAnvzCo8cRsyHOMO/1dJyd2rm0nNx21Xl5TIX8ls8 S5I2TmTr8ULLF6mEsr3RxbuZ1Fi3dGDGThUO27CWQDUW5qL/rE/mOFSqR0PorvGS kCt+FHrPF2nA4fIzhpUmvPMn1FQUYF4Jyac+MZAktJOaN26wOGeq87zsRtU+3DA+ fvM+pLALrowUHQ7pbzR3lZgf4+eSiEoQzNHSsQDlJpXeOjvCNTQD5m5t/tR3XPU2 oGYS7zn+b7ZF9NMUUCzwZ1JCrQz3DfMsV8bWNC83+oP4zxQiV/Y= =S//t -----END PGP SIGNATURE-----
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