Control: tags -1 upstream Control: forwarded -1 yu...@bionet.nsc.ru Control: tags -1 pending
Hi, the Debian packaged version of GenABEL received a bug report once we switched from R 4.1.2 to 4.1.3 The following patch solves this issue: https://salsa.debian.org/r-pkg-team/r-cran-genabel/-/blob/master/debian/patches/fix_PROBLEM.patch Kind regards Andreas. Am Sat, Mar 26, 2022 at 09:47:51PM +0100 schrieb Lucas Nussbaum: > Source: r-cran-genabel > Version: 1.8-0-5 > Severity: serious > Justification: FTBFS > Tags: bookworm sid ftbfs > User: lu...@debian.org > Usertags: ftbfs-20220326 ftbfs-bookworm > > Hi, > > During a rebuild of all packages in sid, your package failed to build > on amd64. > > > Relevant part (hopefully): > > gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 > > -ffile-prefix-map=/build/r-base-yTleYq/r-base-4.1.3.20220324=. > > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time > > -D_FORTIFY_SOURCE=2 -g -c fexact.c -o fexact.o > > fexact.c: In function ‘f3xact’: > > fexact.c:1025:13: error: ‘PROBLEM’ undeclared (first use in this function) > > 1025 | PROBLEM "Bug in FEXACT: gave negative key" > > RECOVER(NULL_ENTRY); > > | ^~~~~~~ > > fexact.c:1025:13: note: each undeclared identifier is reported only once > > for each function it appears in > > fexact.c:1025:20: error: expected ‘;’ before string constant > > 1025 | PROBLEM "Bug in FEXACT: gave negative key" > > RECOVER(NULL_ENTRY); > > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > > | ; > > fexact.c: In function ‘prterr’: > > fexact.c:1806:5: error: ‘PROBLEM’ undeclared (first use in this function) > > 1806 | PROBLEM "FEXACT error %d.\n%s", icode, mes RECOVER(NULL_ENTRY); > > | ^~~~~~~ > > fexact.c:1806:12: error: expected ‘;’ before string constant > > 1806 | PROBLEM "FEXACT error %d.\n%s", icode, mes RECOVER(NULL_ENTRY); > > | ^~~~~~~~~~~~~~~~~~~~~~~ > > | ; > > make[1]: *** [/usr/lib/R/etc/Makeconf:168: fexact.o] Error 1 > > > The full build log is available from: > http://qa-logs.debian.net/2022/03/26/r-cran-genabel_1.8-0-5_unstable.log > > A list of current common problems and possible solutions is available at > http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! > > If you reassign this bug to another package, please marking it as > 'affects'-ing > this package. See https://www.debian.org/Bugs/server-control#affects > > If you fail to reproduce this, please provide a build log and diff it with > mine > so that we can identify if something relevant changed in the meantime. > > _______________________________________________ > R-pkg-team mailing list > r-pkg-t...@alioth-lists.debian.net > https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/r-pkg-team -- http://fam-tille.de
