Control: tags -1 patch On Fri, Mar 04, 2022 at 09:16:45PM +0100, Sebastian Ramacher wrote: > Source: pbbam > Version: 1.7.0+dfsg-2 > Severity: serious > Tags: ftbfs sid bookworm > Justification: fails to build from source (but built successfully in the past) > X-Debbugs-Cc: sramac...@debian.org > > pbbam FTBFS: > > FAILED: src/libpbbam.so.1.7.0.p/AlignmentPrinter.cpp.o > c++ -Isrc/libpbbam.so.1.7.0.p -Isrc -I../src -Iinclude -I../include > -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall > -Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -std=c++14 -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC > -DBOOST_ALL_NO_LIB -pthread -Wduplicated-cond -Wduplicated-branches > -Wlogical-op -Wrestrict -Wnull-dereference -Wuseless-cast -Wdouble-promotion > -Wshadow -Wformat=1 -MD -MQ src/libpbbam.so.1.7.0.p/AlignmentPrinter.cpp.o > -MF src/libpbbam.so.1.7.0.p/AlignmentPrinter.cpp.o.d -o > src/libpbbam.so.1.7.0.p/AlignmentPrinter.cpp.o -c ../src/AlignmentPrinter.cpp > In file included from /usr/include/pbcopper/data/Read.h:11, > from /usr/include/pbcopper/data/MappedRead.h:8, > from ../include/pbbam/BamRecord.h:14, > from ../include/pbbam/AlignmentPrinter.h:11, > from ../src/AlignmentPrinter.cpp:3: > /usr/include/pbcopper/data/ReadId.h:22:10: error: ‘optional’ in namespace > ‘std’ does not name a template type > 22 | std::optional<Interval> ZmwInterval; > | ^~~~~~~~ > /usr/include/pbcopper/data/ReadId.h:22:5: note: ‘std::optional’ is only > available from C++17 onwards >...
The upstream fix is https://github.com/PacificBiosciences/pbbam/commit/0c3da1ac49c42ca443592526a58ae94f2f05493e The minimal fix would be cpp_std=c++17 in meson.build. > Cheers cu Adrian
