Source: busco Version: 5.2.2-1 Severity: serious X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: needs-update User: debian-pyt...@lists.debian.org Usertags: python3.10 Control: affects -1 src:python3-defaults
Hi Maintainer As can be seen [1], the autopkgtests of busco fail when python3.10 is a supported version. This currently blocks the migration of python3-defaults to testing [2]. I've copied what I hope is the relevant part of the log below. Regards Graham [1] https://ci.debian.net/packages/b/busco/unstable/amd64/ [2] https://qa.debian.org/excuses.php?package=python3-defaults ====================================================================== ERROR: test_init_tools_eukaryota_metaeuk (tests.unittests.GenomeAnalysis_unittests.TestConfigManager) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3.10/unittest/mock.py", line 1366, in patched with self.decoration_helper(patched, File "/usr/lib/python3.10/contextlib.py", line 135, in __enter__ return next(self.gen) File "/usr/lib/python3.10/unittest/mock.py", line 1348, in decoration_helper arg = exit_stack.enter_context(patching) File "/usr/lib/python3.10/contextlib.py", line 492, in enter_context result = _cm_type.__enter__(cm) File "/usr/lib/python3.10/unittest/mock.py", line 1528, in __enter__ raise InvalidSpecError( unittest.mock.InvalidSpecError: Cannot autospec attr 'config' from target 'BuscoAnalysis' as it has already been mocked out. [target=<class 'busco.analysis.BuscoAnalysis.BuscoAnalysis'>, attr=<Mock id='140560674098768'>] ====================================================================== ERROR: test_init_tools_prokaryota (tests.unittests.GenomeAnalysis_unittests.TestConfigManager) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3.10/unittest/mock.py", line 1366, in patched with self.decoration_helper(patched, File "/usr/lib/python3.10/contextlib.py", line 135, in __enter__ return next(self.gen) File "/usr/lib/python3.10/unittest/mock.py", line 1348, in decoration_helper arg = exit_stack.enter_context(patching) File "/usr/lib/python3.10/contextlib.py", line 492, in enter_context result = _cm_type.__enter__(cm) File "/usr/lib/python3.10/unittest/mock.py", line 1528, in __enter__ raise InvalidSpecError( unittest.mock.InvalidSpecError: Cannot autospec attr 'config' from target 'BuscoAnalysis' as it has already been mocked out. [target=<class 'busco.analysis.BuscoAnalysis.BuscoAnalysis'>, attr=<Mock id='140560674098768'>] ====================================================================== ERROR: test_run_analysis_metaeuk (tests.unittests.GenomeAnalysis_unittests.TestConfigManager) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3.10/unittest/mock.py", line 1366, in patched with self.decoration_helper(patched, File "/usr/lib/python3.10/contextlib.py", line 135, in __enter__ return next(self.gen) File "/usr/lib/python3.10/unittest/mock.py", line 1348, in decoration_helper arg = exit_stack.enter_context(patching) File "/usr/lib/python3.10/contextlib.py", line 492, in enter_context result = _cm_type.__enter__(cm) File "/usr/lib/python3.10/unittest/mock.py", line 1528, in __enter__ raise InvalidSpecError( unittest.mock.InvalidSpecError: Cannot autospec attr 'config' from target 'BuscoAnalysis' as it has already been mocked out. [target=<class 'busco.analysis.BuscoAnalysis.BuscoAnalysis'>, attr=<Mock id='140560674098768'>] ---------------------------------------------------------------------- Ran 99 tests in 2.065s FAILED (errors=3, skipped=1) autopkgtest [19:49:27]: test run-unit-test: -----------------------] autopkgtest [19:49:28]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - run-unit-test FAIL non-zero exit status 1
