Your message dated Wed, 24 Nov 2021 09:34:26 +0000 with message-id <e1mpofa-000j0p...@fasolo.debian.org> and subject line Bug#1000466: fixed in phonopy 2.12.0-2 has caused the Debian Bug report #1000466, regarding phonopy: autopkgtest failure to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1000466: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1000466 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: phonopy Version: 2.12.0-1 Severity: serious https://ci.debian.net/data/autopkgtest/testing/amd64/p/phonopy/16901578/log.gz ... =================================== FAILURES =================================== _________________________________ test_QHA_Si __________________________________ self = <phonopy.qha.eos.EOSFit object at 0x7feba99a84c0> initial_parameters = [-43.375124, 1.0, 4.0, 163.32] def fit(self, initial_parameters): """Fit.""" import logging import sys import warnings try: > import scipy E ModuleNotFoundError: No module named 'scipy' /usr/lib/python3/dist-packages/phonopy/qha/eos.py:133: ModuleNotFoundError During handling of the above exception, another exception occurred: def test_QHA_Si(): """Test of QHA calculation by Si.""" indices = list(range(11)) > phonopy_qha = PhonopyQHA( volumes=ev_vs_v[indices, 0], electronic_energies=ev_vs_v[indices, 1], eos="vinet", temperatures=temperatures, free_energy=fe_phonon[:, indices], cv=cv[:, indices], entropy=entropy[:, indices], t_max=1000, verbose=True, ) test/qha/test_QHA.py:154: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3/dist-packages/phonopy/api_qha.py:105: in __init__ self._bulk_modulus = BulkModulus(volumes, electronic_energies, eos=eos) /usr/lib/python3/dist-packages/phonopy/qha/core.py:82: in __init__ ) = fit_to_eos(volumes, self._energies, self._eos) /usr/lib/python3/dist-packages/phonopy/qha/eos.py:101: in fit_to_eos fit.fit([fe[len(fe) // 2], 1.0, 4.0, volumes[len(volumes) // 2]]) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <phonopy.qha.eos.EOSFit object at 0x7feba99a84c0> initial_parameters = [-43.375124, 1.0, 4.0, 163.32] def fit(self, initial_parameters): """Fit.""" import logging import sys import warnings try: import scipy from scipy.optimize import leastsq except ImportError: print("You need to install python-scipy.") > sys.exit(1) E SystemExit: 1 /usr/lib/python3/dist-packages/phonopy/qha/eos.py:137: SystemExit ----------------------------- Captured stdout call ----------------------------- You need to install python-scipy. =========================== short test summary info ============================ FAILED test/qha/test_QHA.py::test_QHA_Si - SystemExit: 1 ============= 1 failed, 138 passed, 1 skipped in 62.19s (0:01:02) ============== autopkgtest [15:31:27]: test command1: -----------------------] autopkgtest [15:31:27]: test command1: - - - - - - - - - - results - - - - - - - - - - python3-scipy is a !nocheck build dependency.
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--- Begin Message ---Source: phonopy Source-Version: 2.12.0-2 Done: Andrius Merkys <mer...@debian.org> We believe that the bug you reported is fixed in the latest version of phonopy, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1000...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andrius Merkys <mer...@debian.org> (supplier of updated phonopy package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Wed, 24 Nov 2021 04:16:43 -0500 Source: phonopy Architecture: source Version: 2.12.0-2 Distribution: unstable Urgency: medium Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org> Changed-By: Andrius Merkys <mer...@debian.org> Closes: 1000466 Changes: phonopy (2.12.0-2) unstable; urgency=medium . [ Andrius Merkys ] * python3-phonopy Depends on python3-scipy (Closes: #1000466). . [ lintian-brush ] * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. Checksums-Sha1: 1a4c68ae85cabaa4951672f080a5786a7a70d880 2272 phonopy_2.12.0-2.dsc 03b0f2ec352ef3548393d8e09a467d2e5b41d883 9288 phonopy_2.12.0-2.debian.tar.xz 31a16f26e9959ed1f83f4b8899b230d64d965846 8650 phonopy_2.12.0-2_source.buildinfo Checksums-Sha256: 11154b96ea5ee2409adce700a690e871a813b0281c9fb9c7db91db6dc54d7539 2272 phonopy_2.12.0-2.dsc 8f537e7c2c330d5251f366c7514697739f7975609ba557e34f9835ade8f6d604 9288 phonopy_2.12.0-2.debian.tar.xz 004a2e833e8b8da30876f0fab5ba26223bc25efe5c4da327df5cda3cfbd77bd0 8650 phonopy_2.12.0-2_source.buildinfo Files: a6299f92c6f480b57ffb6e0a68db51a1 2272 libs optional phonopy_2.12.0-2.dsc f6be77a0280ec2f8b0b4511b1152a018 9288 libs optional phonopy_2.12.0-2.debian.tar.xz b93eb56cef17b497d1f5afe8b0e79478 8650 libs optional phonopy_2.12.0-2_source.buildinfo -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmGeA0wSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHs70QAKVOEi+7iiW/u1AZR0Eti+YD6XdYCzLq urakSjDaV27bJfiREy67FFBPxHVddbKQhQ3u2mZ/NUBVJYAEZn1kKaFvfm1jkyRI JSE06fsXTwydKnpL8RW9RtAJxciWbThmBATzG9EY5PpiC8BGW134WBVwd6Wa64Sl w054fXXE61QNZ6psFucuRn/c63bOeOK8TO01EXEp2oNr4cmoev0d43n/9Nd2HAWQ IvDAtIwxs4oz23BAjDtusbMil4gRQmw63r2DivqYWe0f69V0aJAxY5UHpHfi0jQs ArN4+fUrCLnkluHRzWRwTEB0v8q0DI8RJ1QPz6sMImhdWAPu4xqFsfzj/RbF3fSH jcv6pKUuILfw2usRdA2USkW/FU6eSNbgRmKVM7hOHMNfNBwWcIdgbcGTJQcn1ITp jat8OoSTk6PYXc6FRvXlzOV6OUaZjWEOOK+QJcsur3+OgBXQbYyCe0KSMWywydAS y8x7vcALVMKDOzmlTKwoY2MscsvinemKHJ6iGw22rgnZOjgsYF7feucoJqkOTQQR AW6+Xksnikm34lJyv1VtrR7yOrEY3FKoCiCmHBhengl1eaU6XV7Sru3tqM8aev+m 6HMeBn+0E0tlPps/LJiCGNfh/4muOvME+mOIPHsR83/+cdzC9RppKQtaEDwqrav1 OBY9wZG4Pv7N =hbiY -----END PGP SIGNATURE-----
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