Your message dated Mon, 25 Oct 2021 19:25:05 +0000 with message-id <e1mf5aj-000dhg...@fasolo.debian.org> and subject line Bug#997834: fixed in samtools 1.13-4 has caused the Debian Bug report #997834, regarding samtools: binary-any FTBFS to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 997834: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=997834 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: samtools Version: 1.13-3 Severity: serious Tags: ftbfs https://buildd.debian.org/status/logs.php?pkg=samtools&ver=1.13-3 ... dh_install install -d debian/samtools//usr cp --reflink=auto -a debian/tmp/usr/bin debian/samtools//usr/ install -d debian/samtools//usr/share/man cp --reflink=auto -a debian/tmp/usr/share/man/man1 debian/samtools//usr/share/man/ install -d debian/samtools/usr/share/commonwl/ cp --reflink=auto -a ./debian/samtools-faidx.cwl ./debian/samtools-index.cwl ./debian/samtools-rmdup.cwl ./debian/samtools-sort.cwl ./debian/samtools-view.cwl debian/samtools/usr/share/commonwl// cp --reflink=auto -a ./debian/mans/ace2sam.1 ./debian/mans/samtools.pl.1 ./debian/mans/wgsim.1 debian/samtools/usr/share/man/man1/ install -d debian/.debhelper/generated/samtools install -d debian/.debhelper/generated/samtools-test # Fix Perl interpreter PATH for pscript in `grep -Rl '#!/usr/bin/env \+perl' debian/*` ; do \ sed -i '1s?#!/usr/bin/env \+perl?#!/usr/bin/perl?' ${pscript} ; \ done # Disable the executable bit on a dataset. chmod 0644 debian/samtools-test/usr/share/samtools/test/ampliconclip/ac_test.bed chmod: cannot access 'debian/samtools-test/usr/share/samtools/test/ampliconclip/ac_test.bed': No such file or directory make[1]: *** [debian/rules:59: override_dh_install] Error 1
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--- Begin Message ---Source: samtools Source-Version: 1.13-4 Done: Étienne Mollier <emoll...@debian.org> We believe that the bug you reported is fixed in the latest version of samtools, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 997...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Étienne Mollier <emoll...@debian.org> (supplier of updated samtools package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Mon, 25 Oct 2021 20:53:03 +0200 Source: samtools Architecture: source Version: 1.13-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Étienne Mollier <emoll...@debian.org> Closes: 997834 Changes: samtools (1.13-4) unstable; urgency=medium . * [650b7a7] d/rules: only disable executable bit if test package is built. (Closes: #997834) Checksums-Sha1: 4e105039ebeaa420c52d98a88593b0f306abe028 2294 samtools_1.13-4.dsc 38e1fbacbafa420c6e8ca754f72e3ed60904c548 21636 samtools_1.13-4.debian.tar.xz ae90e31f25c884e7b4cd28bbab4217e0273a60e0 7146 samtools_1.13-4_amd64.buildinfo Checksums-Sha256: 21c268267337ea61f54e9d6577b3b926ee1f41a82bbad5eda2fe6f454b29370e 2294 samtools_1.13-4.dsc 6c2b240459a0d9a6798cdcc2eea06b11f039966600bbc79fe452a3115c106f24 21636 samtools_1.13-4.debian.tar.xz 108f63e8c227805310ca06a6ef48d7ade8b62c0d0aa35659e9749dec248ceeaf 7146 samtools_1.13-4_amd64.buildinfo Files: 185312491c73d54da8b6b43f7c131345 2294 science optional samtools_1.13-4.dsc 2122d95a5770cd9d4e98d40d7356c683 21636 science optional samtools_1.13-4.debian.tar.xz bf360d466bca9f3699b7dfdb33c3b26a 7146 science optional samtools_1.13-4_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmF2/qEUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdoegw/+K/Urzp6eym6fUJkFT7ZdGUXgQi8m yk1FFuCAzLNSIK17ovKTP5M4C8qi/HUaeW9hHWWYzPz7d39wZb+fpZdyopmnHjPW 6jSvJV8iFRRV5J+D88pCyPODwaTaV5VXmA377JiCkE8hHRyVfwAAaplGUf+AupDi +skTvRjtba7QSv0Z7xzMEMkz+OSNcF5gUyySs12fKaFNLlTEw8LD1YSYbrs1Wnep +zbbKiyhjbvDpYlxWxmwprSJnQzZITAL9VZ3Z3UKiV0juPp83sWWGigILy+MIJMm Rbrv1AXvgoMGvSSvfgCRlxZP5iHoc9ddqj66EWCAafTT1Is1LgNxjbaWyCOlmqq7 0uVlUqdb1Jgtxwo8il9FqtCdg6GPY0oike7b4hdyi9NqX3z9IB+jzC3OSnuToW6V hlK/WfuWIHuO33l4y0k3PryZj4zhFNCl1ieEBVapaPVxLXHDuvbcaNaQ2+bkl0Jj Pkbj8i8DF4MpumSpWkrHEMcQeIV34yTgFVxQjeNYkasYyaszSYw9rWzTTB279x+d 8AbrHVgAp7hgqk0F/1OJ2y7ALTnC+glCme8wMvqV6peelNlDmjEwfuJvjFIG6t6q 7HNv/4i7T/2KBLVOeKMlz2izJ3ez2nFK2WhVIL9ZOvFrkw9UJm60biIARpCqgkzz eyr22lZvtHhby7I= =2A7k -----END PGP SIGNATURE-----
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