Your message dated Wed, 13 Oct 2021 07:04:33 +0000
with message-id <e1mayjv-000ft7...@fasolo.debian.org>
and subject line Bug#984034: fixed in libzeep 5.1.4-1
has caused the Debian Bug report #984034,
regarding density-fitness: ftbfs with GCC-11
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
984034: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=984034
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:density-fitness
Version: 1.0.0-2
Severity: normal
Tags: sid bookworm
User: debian-...@lists.debian.org
Usertags: ftbfs-gcc-11
[This bug is not targeted to the upcoming bullseye release]
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-11/g++-11, but succeeds to build with gcc-10/g++-10. The
severity of this report will be raised before the bookworm release,
so nothing has to be done for the bullseye release.
The full build log can be found at:
http://people.debian.org/~doko/logs/20210228/filtered/gcc11/density-fitness_1.0.0-2_unstable_gcc11.log
The last lines of the build log are at the end of this report.
To build with GCC 11, either set CC=gcc-11 CXX=g++-11 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-11/porting_to.html
GCC 11 defaults to the GNU++17 standard. If your package installs
header files in /usr/include, please don't work around C++17 issues
by choosing a lower C++ standard for the package build, but fix these
issues to build with the C++17 standard.
[...]
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking filesystem usability... yes
checking filesystem presence... yes
checking for filesystem... yes
checking for boostlib >= 1.65.1 (106501)... yes
checking whether the Boost::Program_Options library is available... yes
checking for exit in -lboost_program_options... yes
checking whether the Boost::IOStreams library is available... yes
checking for exit in -lboost_iostreams... yes
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for pkg-config... /usr/bin/pkg-config
checking for libcifpp ... yes
checking for libzeep ... yes
checking for pkg-config... (cached) /usr/bin/pkg-config
checking for libpdb-redo ... yes
checking for clipper ... yes
checking clipper version... ok
configure: creating ./config.status
config.status: creating GNUmakefile
config.status: creating src/config.hpp
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build
make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p obj
>> src/density-fitness.cpp
In file included from /usr/include/zeep/json/element.hpp:15,
from src/density-fitness.cpp:43:
/usr/include/zeep/json/to_element.hpp:133:40: error: ‘optional’ in namespace
‘std’ does not name a template type
133 | void to_element(element& j, const std::optional<T>& v)
| ^~~~~~~~
/usr/include/zeep/json/to_element.hpp:14:1: note: ‘std::optional’ is defined in
header ‘<optional>’; did you forget to ‘#include <optional>’?
13 | #include <zeep/json/type_traits.hpp>
+++ |+#include <optional>
14 |
/usr/include/zeep/json/to_element.hpp:133:48: error: expected ‘,’ or ‘...’
before ‘<’ token
133 | void to_element(element& j, const std::optional<T>& v)
| ^
/usr/include/zeep/json/to_element.hpp: In function ‘void
zeep::json::detail::to_element(zeep::json::element&, int)’:
/usr/include/zeep/json/to_element.hpp:135:13: error: ‘v’ was not declared in
this scope
135 | if (v)
| ^
In file included from /usr/include/cif++/Compound.hpp:35,
from /usr/include/cif++/Structure.hpp:33,
from /usr/include/pdb-redo/BondMap.hpp:33,
from src/density-fitness.cpp:45:
/usr/include/cif++/Cif++.hpp: At global scope:
/usr/include/cif++/Cif++.hpp:461:50: error: ‘optional’ is not a member of ‘std’
461 | struct ItemReference::item_value_as<std::optional<T>>
| ^~~~~~~~
/usr/include/cif++/Cif++.hpp:41:1: note: ‘std::optional’ is defined in header
‘<optional>’; did you forget to ‘#include <optional>’?
40 | #include "cif++/CifUtils.hpp"
+++ |+#include <optional>
41 |
/usr/include/cif++/Cif++.hpp:461:59: error: template argument 1 is invalid
461 | struct ItemReference::item_value_as<std::optional<T>>
| ^
/usr/include/cif++/Cif++.hpp:461:60: error: expected unqualified-id before ‘>’
token
461 | struct ItemReference::item_value_as<std::optional<T>>
| ^~
make[1]: *** [GNUmakefile:101: obj/density-fitness.o] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j4 returned exit code 2
make: *** [debian/rules:15: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Source: libzeep
Source-Version: 5.1.4-1
Done: Maarten L. Hekkelman <maar...@hekkelman.com>
We believe that the bug you reported is fixed in the latest version of
libzeep, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 984...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Maarten L. Hekkelman <maar...@hekkelman.com> (supplier of updated libzeep
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 29 Sep 2021 15:49:00 +0200
Source: libzeep
Architecture: source
Version: 5.1.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Maarten L. Hekkelman <maar...@hekkelman.com>
Closes: 984034 984216
Changes:
libzeep (5.1.4-1) unstable; urgency=medium
.
* New upstream release, new cmake files
* Fixed compilation with g++-11 (Closes: #984034, #984216)
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--- End Message ---
