Your message dated Wed, 15 Sep 2021 19:48:47 +0000
with message-id <e1mqatj-000gse...@fasolo.debian.org>
and subject line Bug#994259: fixed in resfinder 4.1.5-2
has caused the Debian Bug report #994259,
regarding resfinder: autopkgtest regression on armhf and i386: db_resfinder
--kmaPath /usr/bin/kma' returned non-zero exit status 1
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
994259: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=994259
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: resfinder
Version: 4.1.5-1
X-Debbugs-CC: debian...@lists.debian.org
Severity: serious
User: debian...@lists.debian.org
Usertags: regression
Dear maintainer(s),
With a recent upload of resfinder the autopkgtest of resfinder fails in
testing on armhf and i386 when that autopkgtest is run with the binary
packages of resfinder from unstable. It passes when run with only
packages from testing. In tabular form:
pass fail
resfinder from testing 4.1.5-1
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration to testing [1]. Can
you please investigate the situation and fix it?
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://qa.debian.org/excuses.php?package=resfinder
https://ci.debian.net/data/autopkgtest/testing/armhf/r/resfinder/15226272/log.gz
Indexing files as needed
Error: 0 (Success)
Error: 0 (Success)
Error: 0 (Success)
Error: 0 (Success)
Error: 0 (Success)
Error: 0 (Success)
Error: 0 (Success)
Error: 0 (Success)
Error: 0 (Success)
Error: 0 (Success)
Error: 0 (Success)
Error: 0 (Success)
Error: 0 (Success)
Error: 0 (Success)
Error: 0 (Success)
Error: 0 (Success)
Error: 0 (Success)
Error: 0 (Success)
Done
['INSTALL.py']
Error: 0 (Success)
Error: 0 (Success)
Error: 0 (Success)
Error: 0 (Success)
Error: 0 (Success)
Error: 0 (Success)
Error: 0 (Success)
Error: 0 (Success)
Error: 0 (Success)
Error: 0 (Success)
Error: 0 (Success)
Done
['INSTALL.py']
Running tests
.E.E
======================================================================
ERROR: test_on_data_with_just_acquired_resgene_using_kma
(__main__.ResFinderRunTest)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/tmp/autopkgtest-lxc.3mj3v4rg/downtmp/autopkgtest_tmp/functional_tests.py",
line 151, in test_on_data_with_just_acquired_resgene_using_kma
procs = run(cmd_acquired, shell=True, stdout=PIPE, stderr=PIPE,
File "/usr/lib/python3.9/subprocess.py", line 528, in run
raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command 'run_resfinder.py -ifq
data/test_isolate_01_1.fq data/test_isolate_01_2.fq -o
running_test/test2 -s 'Escherichia coli' --min_cov 0.6 -t 0.8 --acquired
--db_path_res
/tmp/autopkgtest-lxc.3mj3v4rg/downtmp/autopkgtest_tmp/db_resfinder
--kmaPath /usr/bin/kma' returned non-zero exit status 1.
======================================================================
ERROR: test_on_data_with_just_point_mut_using_kma
(__main__.ResFinderRunTest)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/tmp/autopkgtest-lxc.3mj3v4rg/downtmp/autopkgtest_tmp/functional_tests.py",
line 253, in test_on_data_with_just_point_mut_using_kma
procs = run(cmd_acquired, shell=True, stdout=PIPE, stderr=PIPE,
File "/usr/lib/python3.9/subprocess.py", line 528, in run
raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command 'run_resfinder.py -ifq
data/test_isolate_05_1.fq data/test_isolate_05_2.fq -o
running_test/test4 -s 'Escherichia coli' --min_cov 0.6 --threshold 0.8
--point --db_path_point
/tmp/autopkgtest-lxc.3mj3v4rg/downtmp/autopkgtest_tmp/db_pointfinder
--db_path_res
/tmp/autopkgtest-lxc.3mj3v4rg/downtmp/autopkgtest_tmp/db_resfinder
--kmaPath /usr/bin/kma' returned non-zero exit status 1.
----------------------------------------------------------------------
Ran 4 tests in 16.971s
FAILED (errors=2)
OpenPGP_signature
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: resfinder
Source-Version: 4.1.5-2
Done: Étienne Mollier <emoll...@debian.org>
We believe that the bug you reported is fixed in the latest version of
resfinder, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 994...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <emoll...@debian.org> (supplier of updated resfinder package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 15 Sep 2021 21:25:13 +0200
Source: resfinder
Architecture: source
Version: 4.1.5-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emoll...@debian.org>
Closes: 994259
Changes:
resfinder (4.1.5-2) unstable; urgency=medium
.
* Team upload.
* d/t/control: restrict autopkgtest to 64-bit archs (Closes: #994259)
* Standards-Version: 4.6.0 (routine-update)
* Apply multi-arch hints.
+ resfinder-example: Add Multi-Arch: foreign.
Checksums-Sha1:
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b04e1f097a1982bac2f9e402b03d258ce789422c 6884 resfinder_4.1.5-2.debian.tar.xz
15efc0788dc0783ba96041b55ef97300ad9d355f 6258 resfinder_4.1.5-2_amd64.buildinfo
Checksums-Sha256:
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resfinder_4.1.5-2.dsc
dfd5ac26a91728ecce388c7888c94b0bdd9433b2c92b51fdc9f90c45a52ced01 6884
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resfinder_4.1.5-2_amd64.buildinfo
Files:
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fef070369bbb0e827d32ef18720171ec 6884 science optional
resfinder_4.1.5-2.debian.tar.xz
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resfinder_4.1.5-2_amd64.buildinfo
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--- End Message ---
