Your message dated Thu, 11 Feb 2021 15:06:14 +0000
with message-id <e1ladxq-0003pr...@fasolo.debian.org>
and subject line Bug#981293: fixed in metastudent-data 2.0.1-6
has caused the Debian Bug report #981293,
regarding metastudent-data breaks metastudent autopkgtest: 255
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
981293: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=981293
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: metastudent-data, metastudent
Control: found -1 metastudent-data/2.0.1-5
Control: found -1 metastudent/2.0.1-8
Severity: serious
Tags: sid bullseye
X-Debbugs-CC: debian...@lists.debian.org
User: debian...@lists.debian.org
Usertags: breaks needs-update
Dear maintainer(s),
With a recent upload (60 days ago) of metastudent-data the autopkgtest
of metastudent fails in testing when that autopkgtest is run with the
binary packages of metastudent-data from unstable. It passes when run
with only packages from testing. In tabular form:
pass fail
metastudent-data from testing 2.0.1-5
metastudent from testing 2.0.1-8
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration of metastudent-data
to testing [1]. Due to the nature of this issue, I filed this bug report
against both packages. Can you please investigate the situation and
reassign the bug to the right package?
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://qa.debian.org/excuses.php?package=metastudent-data
https://ci.debian.net/data/autopkgtest/testing/amd64/m/metastudent/10073288/log.gz
autopkgtest [10:33:51]: test run-unit-test: [-----------------------
The Rost Lab recommends you install the pp-popularity-contest package
that provides pp_popcon_cnt:
sudo apt-get install pp-popularity-contest
Error occurred: Exception
Creating tmpDir...
Using
/tmp/autopkgtest-lxc.27xrgf95/downtmp/autopkgtest_tmp/metastudentr2yep04q
Copying input file to tmpDir...
Loading Gene Ontology...
Running Blast MFO
!!!Error!!! /usr/bin/blastpgp -i
/tmp/autopkgtest-lxc.27xrgf95/downtmp/autopkgtest_tmp/metastudentr2yep04q/fasta_splits/split_0.fasta
-o
/tmp/autopkgtest-lxc.27xrgf95/downtmp/autopkgtest_tmp/metastudentr2yep04q/fasta_splits/split_0.fasta.blast
-d /usr/share/metastudent-data/dataset_201401/MFO/goasp.fasta -e 1.0 -j
3 -b 1000 -v 1000
1>/tmp/autopkgtest-lxc.27xrgf95/downtmp/autopkgtest_tmp/metastudentr2yep04q/fasta_splits/split_0.fasta.blast.out
2>/tmp/autopkgtest-lxc.27xrgf95/downtmp/autopkgtest_tmp/metastudentr2yep04q/fasta_splits/split_0.fasta.blast.err
255
Deleting temp directories...
====== Metastudent finished ======
Traceback (most recent call last):
File "/usr/bin/metastudent", line 775, in <module>
runIt(tempfile, inputFastaFilePath, outputFilePath, outputBlast,
blastKickstartDatabasePaths,
File "/usr/bin/metastudent", line 202, in runIt
runBlast(fastaFilePathLocal, database, blastOutputFilePathLocal,
tmpDirPath, configMap["BLAST_EVAL_%s" % (
File "/usr/lib/python3/dist-packages/metastudentPkg/runMethods.py",
line 46, in runBlast
raise Exception
Exception
autopkgtest [10:33:53]: test run-unit-test: -----------------------]
OpenPGP_signature
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: metastudent-data
Source-Version: 2.0.1-6
Done: Andreas Tille <ti...@debian.org>
We believe that the bug you reported is fixed in the latest version of
metastudent-data, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 981...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated metastudent-data package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 11 Feb 2021 15:09:01 +0100
Source: metastudent-data
Architecture: source
Version: 2.0.1-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Closes: 981293
Changes:
metastudent-data (2.0.1-6) unstable; urgency=medium
.
* Team upload.
* Enable BLASTDB version 5 format
Closes: #981293
Checksums-Sha1:
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858ea7df974f73dc925b663073710c73b7118460 5156
metastudent-data_2.0.1-6.debian.tar.xz
a065a993c1eab0c28cb8a8b1e471936499563f11 6385
metastudent-data_2.0.1-6_amd64.buildinfo
Checksums-Sha256:
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metastudent-data_2.0.1-6.dsc
afcd9c7070abf1bac3196024bff95dc9d138000cf41b999de0139ca0dfc6c8b0 5156
metastudent-data_2.0.1-6.debian.tar.xz
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metastudent-data_2.0.1-6_amd64.buildinfo
Files:
f8ff52cbf8fb9eb0081e02869d67e8ea 2150 science optional
metastudent-data_2.0.1-6.dsc
dd5c624480ab76a3caedcc89231fea6c 5156 science optional
metastudent-data_2.0.1-6.debian.tar.xz
f3823e3076432358676d835e4d845ec0 6385 science optional
metastudent-data_2.0.1-6_amd64.buildinfo
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--- End Message ---
