Your message dated Sat, 30 Jan 2021 08:57:52 -0600
with message-id <24597.29680.445478.248...@rob.eddelbuettel.com>
and subject line Re: Bug#980809: log on s390x
has caused the Debian Bug report #980809,
regarding rmatrix: breaks autopkgtest of r-cran-glmmtmb on s390x
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
980809: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=980809
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: rmatrix, r-cran-glmmtmb
Control: found -1 rmatrix/1.3-0-1
Control: found -1 r-cran-glmmtmb/1.0.2.1-1
Severity: serious
Tags: sid bullseye
X-Debbugs-CC: debian...@lists.debian.org
User: debian...@lists.debian.org
Usertags: breaks needs-update
Hi Maintainers
The upload of rmatrix/1.3-0-1 caused the autopkgtest of r-cran-glmmtmb
on s390x to fail.
Unfortunately, gating of autopkgtest failures was not yet enabled on
s390x at the time, and this failure has now made it into testing [2].
I've copied what I hope is the relevant part of the log below.
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Regards
Graham
[1] https://ci.debian.net/packages/r/r-cran-glmmtmb/unstable/s390x/
[2] https://ci.debian.net/packages/r/r-cran-glmmtmb/testing/s390x/
== Failed ======================================================================
-- 1. Error (test-VarCorr.R:11:1): (code run outside of `test_that()`) ---------
Error: gradient function must return a numeric vector of length 6
Backtrace:
1. glmmTMB::glmmTMB(distance ~ age + (age | Subject), data =
Orthodont) test-VarCorr.R:11:0
2. glmmTMB::fitTMB(TMBStruc)
4. glmmTMB:::optfun()
6. base::with.default(...)
7. [ base::eval(...) ] with 1 more call
-- 2. Error (test-basics.R:29:1): (code run outside of `test_that()`) ----------
Error: gradient function must return a numeric vector of length 3
Backtrace:
1. glmmTMB::glmmTMB(Reaction ~ 1 + (1 | Subject), sleepstudy)
test-basics.R:29:0
2. glmmTMB::fitTMB(TMBStruc)
4. glmmTMB:::optfun()
6. base::with.default(...)
7. [ base::eval(...) ] with 1 more call
-- 3. Error (test-bootMer.R:11:5): Bernoulli responses -------------------------
Error: gradient function must return a numeric vector of length 3
Backtrace:
1. glmmTMB::glmmTMB(...) test-bootMer.R:11:4
2. glmmTMB::fitTMB(TMBStruc)
4. glmmTMB:::optfun()
6. base::with.default(...)
7. [ base::eval(...) ] with 1 more call
-- 4. Error (test-bootMer.R:19:5): Bernoulli responses -------------------------
Error: gradient function must return a numeric vector of length 3
Backtrace:
1. glmmTMB::glmmTMB(...) test-bootMer.R:19:4
2. glmmTMB::fitTMB(TMBStruc)
4. glmmTMB:::optfun()
6. base::with.default(...)
7. [ base::eval(...) ] with 1 more call
-- 5. Error (test-control.R:26:5): profile method ------------------------------
Error: gradient function must return a numeric vector of length 15
Backtrace:
1. glmmTMB:::myfit(profile = FALSE) test-control.R:26:4
2. glmmTMB::glmmTMB(...) test-control.R:20:8
3. glmmTMB::fitTMB(TMBStruc)
5. glmmTMB:::optfun()
7. base::with.default(...)
8. [ base::eval(...) ] with 1 more call
-- 6. Error (test-control.R:71:3): parallel regions ----------------------------
Error: gradient function must return a numeric vector of length 15
Backtrace:
1. glmmTMB:::capture_time_model(parallel = 1) test-control.R:71:2
2. glmmTMB:::myfit(...) test-control.R:64:4
3. glmmTMB::glmmTMB(...) test-control.R:54:4
4. glmmTMB::fitTMB(TMBStruc)
6. glmmTMB:::optfun()
8. base::with.default(...)
9. [ base::eval(...) ] with 1 more call
-- 7. Error (test-disp.R:33:1): (code run outside of `test_that()`) ------------
Error: gradient function must return a numeric vector of length 5
Backtrace:
1. glmmTMB::glmmTMB(x ~ disp + (1 | fac), dispformula = ~disp, dat)
test-disp.R:33:0
2. glmmTMB::fitTMB(TMBStruc)
4. glmmTMB:::optfun()
6. base::with.default(...)
7. [ base::eval(...) ] with 1 more call
-- 8. Error (test-edgecases.R:9:5): profiling failure --------------------------
Error: gradient function must return a numeric vector of length 3
Backtrace:
1. testthat::expect_warning(...) test-edgecases.R:9:4
6. glmmTMB::glmmTMB(...)
7. glmmTMB::fitTMB(TMBStruc)
9. glmmTMB:::optfun()
11. base::with.default(...)
12. [ base::eval(...) ] with 1 more call
-- 9. Error (test-env.R:18:5): basic example #1 --------------------------------
Error: gradient function must return a numeric vector of length 4
Backtrace:
1. glmmTMB::glmmTMB(Reaction ~ Days + (1 | Subject), data =
sleepstudy) test-env.R:18:4
2. glmmTMB::fitTMB(TMBStruc)
4. glmmTMB:::optfun()
6. base::with.default(...)
7. [ base::eval(...) ] with 1 more call
-- 10. Error (test-env.R:34:5): paranoia ---------------------------------------
Error: gradient function must return a numeric vector of length 4
Backtrace:
1. glmmTMB::glmmTMB(Reaction ~ Days + (1 | Subject), data =
sleepstudy) test-env.R:34:4
2. glmmTMB::fitTMB(TMBStruc)
4. glmmTMB:::optfun()
6. base::with.default(...)
7. [ base::eval(...) ] with 1 more call
... and 20 more
Maximum number of 10 failures reached, some test results may be missing.
--- End Message ---
--- Begin Message ---
On 30 January 2021 at 08:56, Dirk Eddelbuettel wrote:
|
| On 29 January 2021 at 19:54, Paul Gevers wrote:
| | On request of Graham I ran the autopkgtest on 390x manually to speed up
| | the results.
| |
| | Please find the output attached.
|
| Thank you. I looked at it, and it appears to show what I promised all along:
| it works one once the newer Matrix package is installed.
|
| So my package really has nothing to do with this; it is the_upstream_ package
| so I am closing this now.
Mistyped, my apologies: it is the "downstram from Matrix" package using it
that caused this, and no issue in Matrix, so I am closing this now.
Dirk
| Dirk
|
| |
| | Paul
| | x[DELETED ATTACHMENT r-cran-glmm...@s390x.tar.gz, application/gzip]
| | x[DELETED ATTACHMENT OpenPGP_signature, application/pgp-signature]
|
| --
| https://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org
--
https://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org
--- End Message ---
