Your message dated Fri, 22 Jan 2021 23:32:32 +0100
with message-id <a1ac21a04b3b19ffb8d21c301b491...@emerall.com>
and subject line Re: Bug#980661 python-griddataformats: FTBFS: dh_auto_test:
error: pybuild --test --test-pytest -i python{version} -p 3.9 returned exit
code 13
has caused the Debian Bug report #980661,
regarding python-griddataformats: FTBFS: dh_auto_test: error: pybuild --test
--test-pytest -i python{version} -p 3.9 returned exit code 13
to be marked as done.This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 980661: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=980661 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: python-griddataformats Version: 0.5.0-3 Severity: serious Justification: FTBFS on amd64 Tags: bullseye sid ftbfs Usertags: ftbfs-20210120 ftbfs-bullseye Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > debian/rules build > dh build --with python3 --buildsystem=pybuild > dh_update_autotools_config -O--buildsystem=pybuild > dh_autoreconf -O--buildsystem=pybuild > dh_auto_configure -O--buildsystem=pybuild > I: pybuild base:232: python3.9 setup.py config > running config > dh_auto_build -O--buildsystem=pybuild > I: pybuild base:232: /usr/bin/python3 setup.py build > running build > running build_py > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_gridData/build/gridData > copying gridData/core.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_gridData/build/gridData > copying gridData/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_gridData/build/gridData > copying gridData/OpenDX.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_gridData/build/gridData > copying gridData/_version.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_gridData/build/gridData > copying gridData/gOpenMol.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_gridData/build/gridData > copying gridData/CCP4.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_gridData/build/gridData > creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_gridData/build/gridData/tests > copying gridData/tests/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_gridData/build/gridData/tests > copying gridData/tests/test_grid.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_gridData/build/gridData/tests > copying gridData/tests/test_gOpenMol.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_gridData/build/gridData/tests > copying gridData/tests/test_dx.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_gridData/build/gridData/tests > copying gridData/tests/test_ccp4.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_gridData/build/gridData/tests > creating > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_gridData/build/gridData/tests/datafiles > copying gridData/tests/datafiles/__init__.py -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_gridData/build/gridData/tests/datafiles > copying gridData/tests/datafiles/test.dx -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_gridData/build/gridData/tests/datafiles > copying gridData/tests/datafiles/test.ccp4 -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_gridData/build/gridData/tests/datafiles > copying gridData/tests/datafiles/1jzv.ccp4 -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_gridData/build/gridData/tests/datafiles > copying gridData/tests/datafiles/nAChR_M2_water.plt -> > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_gridData/build/gridData/tests/datafiles > UPDATING > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_gridData/build/gridData/_version.py > set > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_gridData/build/gridData/_version.py to > '0.5.0' > dh_auto_test -O--buildsystem=pybuild > I: pybuild base:232: cd > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_gridData/build; python3.9 -m pytest > ============================= test session starts > ============================== > platform linux -- Python 3.9.1+, pytest-6.0.2, py-1.10.0, pluggy-0.13.0 > rootdir: /<<PKGBUILDDIR>> > collected 87 items > > gridData/tests/test_ccp4.py .................................. [ > 39%] > gridData/tests/test_dx.py ............... [ > 56%] > gridData/tests/test_gOpenMol.py . [ > 57%] > gridData/tests/test_grid.py .............s.......F......xxx...... > [100%] > > =================================== FAILURES > =================================== > ________________________ TestGrid.test_resample_factor > _________________________ > > self = <gridData.tests.test_grid.TestGrid object at 0x7f9db042f400> > data = {'delta': array([1., 1., 1.]), 'grid': <<class 'gridData.core.Grid'> > with (3, 3, 3) bins>, 'griddata': array([[[ 1, 2... [16, 17, 18]], > > [[19, 20, 21], > [22, 23, 24], > [25, 26, 27]]]), 'origin': array([0., 0., 0.])} > > def test_resample_factor(self, data): > pytest.importorskip('scipy') > > g = data['grid'].resample_factor(2) > assert_array_equal(g.delta, np.ones(3) * .5) > assert_array_equal(g.grid.shape, np.ones(3) * 6) > # check that the edges are the same > > assert_array_almost_equal(g.grid[::5, ::5, ::5], > data['grid'].grid[::2, ::2, ::2]) > E AssertionError: > E Arrays are not almost equal to 6 decimals > E > E Mismatched elements: 8 / 8 (100%) > E Max absolute difference: 5.12890625 > E Max relative difference: 5.12890625 > E x: array([[[-4.128906, -1.339844], > E [ 4.238281, 7.027344]], > E ... > E y: array([[[ 1, 3], > E [ 7, 9]], > E ... > > gridData/tests/test_grid.py:171: AssertionError > =========================== short test summary info > ============================ > FAILED gridData/tests/test_grid.py::TestGrid::test_resample_factor - > Assertio... > ============== 1 failed, 82 passed, 1 skipped, 3 xfailed in 0.58s > ============== > E: pybuild pybuild:353: test: plugin distutils failed with: exit code=1: cd > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_gridData/build; python3.9 -m pytest > dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9 > returned exit code 13 The full build log is available from: http://qa-logs.debian.net/2021/01/20/python-griddataformats_0.5.0-3_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please marking it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with me so that we can identify if something relevant changed in the meantime. About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
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--- Begin Message ---Control: fixed 980661 0.5.0+git20200812.be6132a-1Looks like we were looking at this at the same time, and I missed your bug report.This problem was fixed in upstream git. Git master now uploaded to unstable.Drew
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