Your message dated Sun, 06 Dec 2020 00:18:39 +0000
with message-id <[email protected]>
and subject line Bug#962553: fixed in gffread 0.12.1-2
has caused the Debian Bug report #962553,
regarding gffread: autopkgtest needs update for new version of gff2aplot:
warning on stderr
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
962553: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=962553
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: gffread
Version: 0.11.8-1
Severity: serious
X-Debbugs-CC: [email protected], [email protected]
Tags: sid bullseye
User: [email protected]
Usertags: needs-update
Control: affects -1 src:gff2aplot
Dear maintainer(s),
With a recent upload of gff2aplot the autopkgtest of gffread fails in
testing when that autopkgtest is run with the binary packages of
gff2aplot from unstable. It passes when run with only packages from
testing. In tabular form:
pass fail
gff2aplot from testing 2.0-12
gffread from testing 0.11.8-1
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration of gff2aplot to
testing [1]. Of course, gff2aplot shouldn't just break your autopkgtest
(or even worse, your package), but it seems to me that the change in
gff2aplot was intended and your package needs to update to the new
situation. If you can't fix the issue which triggers the warning, you
can add the allow-stderr restriction for your test.
If this is a real problem in your package (and not only in your
autopkgtest), the right binary package(s) from gff2aplot should really
add a versioned Breaks on the unfixed version of (one of your)
package(s). Note: the Breaks is nice even if the issue is only in the
autopkgtest as it helps the migration software to figure out the right
versions to combine in the tests.
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://qa.debian.org/excuses.php?package=gff2aplot
https://ci.debian.net/data/autopkgtest/testing/amd64/g/gffread/5834059/log.gz
autopkgtest [01:19:28]: test run-tests: - - - - - - - - - - stderr - -
- - - - - - - -
Warning: invalid start coordinate at line:
#name1:name2 source feature beg1:beg2
end1:end2 score strand frame
group comment
Warning: invalid start coordinate at line:
#name1:name2 source feature beg1:beg2
end1:end2 score strand frame
group comment
autopkgtest [01:19:28]: @@@@@@@@@@@@@@@@@@@@ summary
run-tests FAIL stderr: Warning: invalid start coordinate at line:
signature.asc
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: gffread
Source-Version: 0.12.1-2
Done: Graham Inggs <[email protected]>
We believe that the bug you reported is fixed in the latest version of
gffread, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Graham Inggs <[email protected]> (supplier of updated gffread package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 05 Dec 2020 23:56:29 +0000
Source: gffread
Architecture: source
Version: 0.12.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Graham Inggs <[email protected]>
Closes: 962553
Changes:
gffread (0.12.1-2) unstable; urgency=medium
.
* Team upload
* Skip two failing tests from gff2aplot that were not run
previously due to being compressed (Closes: #962553)
* Adjust autopkgtest dependencies for various architectures
* Bump Standards-Version to 4.5.1, no changes
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d741db2cc333fd28a0deb9165faa78d680078b69 8288 gffread_0.12.1-2.debian.tar.xz
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gffread_0.12.1-2.dsc
01c39502325660eb9696c85ef5e50319e7eb99e976b05b65fa2b07e81dce72e3 8288
gffread_0.12.1-2.debian.tar.xz
Files:
f5d6a2bb57d73812bdbdcad9902dab69 2407 science optional gffread_0.12.1-2.dsc
25858f04e98e5882ddd2b7cd554e482d 8288 science optional
gffread_0.12.1-2.debian.tar.xz
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