Source: pbbam Version: 1.3.0+dfsg-2 Severity: serious Justification: FTBFS on amd64 Tags: bullseye sid ftbfs Usertags: ftbfs-20201027 ftbfs-bullseye
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > c++ -Itests/pbbam_test.p -Itests -I../tests -Iinclude -I../include > -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe > -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 > -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB > -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op > -Wrestrict -Wnull-dereference -Wuseless-cast -Wdouble-promotion -Wshadow > -Wformat=1 -MD -MQ tests/pbbam_test.p/src_test_ReadGroupInfo.cpp.o -MF > tests/pbbam_test.p/src_test_ReadGroupInfo.cpp.o.d -o > tests/pbbam_test.p/src_test_ReadGroupInfo.cpp.o -c > ../tests/src/test_ReadGroupInfo.cpp > In file included from /usr/include/boost/optional/optional.hpp:33, > from /usr/include/boost/optional.hpp:15, > from ../include/pbbam/ReadGroupInfo.h:19, > from ../tests/src/test_ReadGroupInfo.cpp:13: > /usr/include/boost/optional/optional.hpp: In instantiation of > ‘std::basic_ostream<_CharT, _Traits>& > boost::operator<<(std::basic_ostream<_CharT, _Traits>&, const > boost::optional_detail::optional_tag&) [with CharType = char; CharTrait = > std::char_traits<char>]’: > /usr/include/gtest/gtest-printers.h:217:9: required from ‘static void > testing::internal::internal_stream_operator_without_lexical_name_lookup::StreamPrinter::PrintValue(const > T&, std::ostream*) [with T = boost::optional<std::pair<short unsigned int, > short unsigned int> >; <template-parameter-1-2> = void; > <template-parameter-1-3> = std::basic_ostream<char>&; std::ostream = > std::basic_ostream<char>]’ > /usr/include/gtest/gtest-printers.h:305:22: required from ‘void > testing::internal::PrintWithFallback(const T&, std::ostream*) [with T = > boost::optional<std::pair<short unsigned int, short unsigned int> >; > std::ostream = std::basic_ostream<char>]’ > /usr/include/gtest/gtest-printers.h:434:30: required from ‘void > testing::internal::PrintTo(const T&, std::ostream*) [with T = > boost::optional<std::pair<short unsigned int, short unsigned int> >; > std::ostream = std::basic_ostream<char>]’ > /usr/include/gtest/gtest-printers.h:630:12: required from ‘static void > testing::internal::UniversalPrinter<T>::Print(const T&, std::ostream*) [with > T = boost::optional<std::pair<short unsigned int, short unsigned int> >; > std::ostream = std::basic_ostream<char>]’ > /usr/include/gtest/gtest-printers.h:858:30: required from ‘void > testing::internal::UniversalPrint(const T&, std::ostream*) [with T = > boost::optional<std::pair<short unsigned int, short unsigned int> >; > std::ostream = std::basic_ostream<char>]’ > /usr/include/gtest/gtest-printers.h:786:19: [ skipping 2 instantiation > contexts, use -ftemplate-backtrace-limit=0 to disable ] > /usr/include/gtest/gtest-printers.h:327:36: required from ‘static > std::string testing::internal::FormatForComparison<ToPrint, > OtherOperand>::Format(const ToPrint&) [with ToPrint = > boost::optional<std::pair<short unsigned int, short unsigned int> >; > OtherOperand = boost::none_t; std::string = std::__cxx11::basic_string<char>]’ > /usr/include/gtest/gtest-printers.h:408:45: required from ‘std::string > testing::internal::FormatForComparisonFailureMessage(const T1&, const T2&) > [with T1 = boost::optional<std::pair<short unsigned int, short unsigned int> > >; T2 = boost::none_t; std::string = std::__cxx11::basic_string<char>]’ > /usr/include/gtest/gtest.h:1528:53: required from ‘testing::AssertionResult > testing::internal::CmpHelperEQFailure(const char*, const char*, const T1&, > const T2&) [with T1 = boost::none_t; T2 = boost::optional<std::pair<short > unsigned int, short unsigned int> >]’ > /usr/include/gtest/gtest.h:1549:28: required from ‘testing::AssertionResult > testing::internal::CmpHelperEQ(const char*, const char*, const T1&, const > T2&) [with T1 = boost::none_t; T2 = boost::optional<std::pair<short unsigned > int, short unsigned int> >]’ > /usr/include/gtest/gtest.h:1572:23: required from ‘static > testing::AssertionResult testing::internal::EqHelper::Compare(const char*, > const char*, const T1&, const T2&) [with T1 = boost::none_t; T2 = > boost::optional<std::pair<short unsigned int, short unsigned int> >; typename > std::enable_if<((! std::is_integral<_Tp>::value) || (! > std::is_pointer<_Dp>::value))>::type* <anonymous> = 0]’ > ../tests/src/test_ReadGroupInfo.cpp:275:9: required from here > /usr/include/boost/optional/optional.hpp:1591:3: error: static assertion > failed: If you want to output boost::optional, include header > <boost/optional/optional_io.hpp> > 1591 | BOOST_STATIC_ASSERT_MSG(sizeof(CharType) == 0, "If you want to > output boost::optional, include header <boost/optional/optional_io.hpp>"); > | ^~~~~~~~~~~~~~~~~~~~~~~ > [170/218] c++ -Itests/pbbam_test.p -Itests -I../tests -Iinclude -I../include > -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe > -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 > -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB > -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op > -Wrestrict -Wnull-dereference -Wuseless-cast -Wdouble-promotion -Wshadow > -Wformat=1 -MD -MQ tests/pbbam_test.p/src_test_RunMetadata.cpp.o -MF > tests/pbbam_test.p/src_test_RunMetadata.cpp.o.d -o > tests/pbbam_test.p/src_test_RunMetadata.cpp.o -c > ../tests/src/test_RunMetadata.cpp > [171/218] c++ -Itests/pbbam_test.p -Itests -I../tests -Iinclude -I../include > -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe > -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 > -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB > -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op > -Wrestrict -Wnull-dereference -Wuseless-cast -Wdouble-promotion -Wshadow > -Wformat=1 -MD -MQ tests/pbbam_test.p/src_test_PbiFilterQuery.cpp.o -MF > tests/pbbam_test.p/src_test_PbiFilterQuery.cpp.o.d -o > tests/pbbam_test.p/src_test_PbiFilterQuery.cpp.o -c > ../tests/src/test_PbiFilterQuery.cpp > [172/218] c++ -Itests/pbbam_test.p -Itests -I../tests -Iinclude -I../include > -I/usr/include -fdiagnostics-color=always -DNDEBUG -pipe > -D_FILE_OFFSET_BITS=64 -std=c++14 -g -O2 > -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBOOST_ALL_NO_LIB > -DGTEST_HAS_PTHREAD=1 -Wduplicated-cond -Wduplicated-branches -Wlogical-op > -Wrestrict -Wnull-dereference -Wuseless-cast -Wdouble-promotion -Wshadow > -Wformat=1 -MD -MQ tests/pbbam_test.p/src_test_PbiFilter.cpp.o -MF > tests/pbbam_test.p/src_test_PbiFilter.cpp.o.d -o > tests/pbbam_test.p/src_test_PbiFilter.cpp.o -c ../tests/src/test_PbiFilter.cpp > ninja: build stopped: subcommand failed. > dh_auto_build: error: cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 ninja -j4 -v > returned exit code 1 > make: *** [debian/rules:13: binary] Error 25 The full build log is available from: http://qa-logs.debian.net/2020/10/27/pbbam_1.3.0+dfsg-2_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
