Source: r-bioc-tcgabiolinks Version: 2.16.4+dfsg-1 Severity: serious Tags: sid bullseye X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: regression
Hi Maintainer Since 2020-10-08, the autopkgtest of r-bioc-tcgabiolinks has been failing [1]. I've copied what I hope is the relevant part of the log below. Does this autopkgtest download data? If so, please add the 'needs-internet' [2] restriction to debian/tests/control, or even skip that particular test. Regards Graham [1] https://ci.debian.net/packages/r/r-bioc-tcgabiolinks/testing/amd64/ [2] https://salsa.debian.org/ci-team/autopkgtest/raw/master/doc/README.package-tests.rst ── 1. Error: Preparing HT_HG-U133A as SE works (@test-prepare-download.R#193) ─ failed to get URL after 3 tries: error: SSL certificate problem: unable to get local issuer certificate Backtrace: 1. TCGAbiolinks::GDCprepare(query, summarizedExperiment = TRUE) 2. TCGAbiolinks:::readGeneExpressionQuantification(...) 3. TCGAbiolinks:::makeSEfromGeneExpressionQuantification(...) 4. TCGAbiolinks::get.GRCh.bioMart(genome)
