Your message dated Sun, 06 Sep 2020 23:03:29 +0000
with message-id <[email protected]>
and subject line Bug#963430: fixed in artemis 18.1.0+dfsg-1
has caused the Debian Bug report #963430,
regarding artemis: FTBFS: /bin/sh: 1: /usr/share/java/j2ssh-core.jar:
Permission denied
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
963430: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=963430
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: artemis
Version: 17.0.1+dfsg-2
Severity: serious
Justification: FTBFS on amd64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20200620 ftbfs-bullseye
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> debian/rules build
> dh build --with javahelper
> dh_update_autotools_config
> dh_autoreconf
> dh_auto_configure
> jh_linkjars
> debian/rules override_dh_auto_build
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_auto_build -- jar
> make -j4 "INSTALL=install --strip-program=true" jar
> make[2]: Entering directory '/<<PKGBUILDDIR>>'
> CLASSPATH=/usr/share/java/biojava.jar /usr/share/java/j2ssh-core.jar
> /usr/share/java/ibatis.jar /usr/share/java/log4j-1.2.jar
> /usr/share/java/postgresql-jdbc3.jar /usr/share/java/picard.jar
> /usr/share/java/htsjdk.jar /usr/share/java/commons-net.jar
> /usr/share/java/commons-lang3.jar /usr/share/java/batik-all.jar
> /usr/share/java/batik-awt-util.jar /usr/share/java/batik-dom.jar
> /usr/share/java/batik-ext.jar /usr/share/java/batik-svggen.jar
> /usr/share/java/batik-util.jar /usr/share/java/batik-xml.jar
> /usr/share/EMBOSS/jemboss/lib/jemboss.jar /<<PKGBUILDDIR>>: javac -source 1.8
> -target 1.8 uk/ac/sanger/artemis/Action.java
> CLASSPATH=/usr/share/java/biojava.jar /usr/share/java/j2ssh-core.jar
> /usr/share/java/ibatis.jar /usr/share/java/log4j-1.2.jar
> /usr/share/java/postgresql-jdbc3.jar /usr/share/java/picard.jar
> /usr/share/java/htsjdk.jar /usr/share/java/commons-net.jar
> /usr/share/java/commons-lang3.jar /usr/share/java/batik-all.jar
> /usr/share/java/batik-awt-util.jar /usr/share/java/batik-dom.jar
> /usr/share/java/batik-ext.jar /usr/share/java/batik-svggen.jar
> /usr/share/java/batik-util.jar /usr/share/java/batik-xml.jar
> /usr/share/EMBOSS/jemboss/lib/jemboss.jar /<<PKGBUILDDIR>>: javac -source 1.8
> -target 1.8 uk/ac/sanger/artemis/ActionController.java
> /bin/sh: 1: /usr/share/java/j2ssh-core.jar: Permission denied
> make[2]: *** [Makefile:48: uk/ac/sanger/artemis/Action.class] Error 126
The full build log is available from:
http://qa-logs.debian.net/2020/06/20/artemis_17.0.1+dfsg-2_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: artemis
Source-Version: 18.1.0+dfsg-1
Done: Pierre Gruet <[email protected]>
We believe that the bug you reported is fixed in the latest version of
artemis, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Pierre Gruet <[email protected]> (supplier of updated artemis package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sun, 06 Sep 2020 22:43:16 +0200
Source: artemis
Architecture: source
Version: 18.1.0+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Pierre Gruet <[email protected]>
Closes: 963430
Changes:
artemis (18.1.0+dfsg-1) unstable; urgency=medium
.
[ Andreas Tille ]
* Fix edam syntax input+output is singular
.
[ Michael R. Crusoe ]
* forwarded a patch upstream
.
[ Steffen Moeller ]
* Added ref to conda
* d/u/metadata: yamllint
.
[ Pierre Gruet ]
* New upstream version 18.1.0+dfsg
Closes: #963430
* Bumping Standards version to 4.5.0 (Rules-Requires-Root field added)
* Depending on debhelper-compat
* Updating Files-Excluded patterns in debian/copyright
* Removing patches written for the old ant build
* Adding metadata relative to Issues and Repository
* Updating dependencies as Maven now replaces ant for the build
* Updating debian/copyright as paths have changed
* Building with Maven instead of ant
* Fixing insecure uri and trailing whitespaces in debian/control
* Replacing symlinks to jars with upstream-provided scripts
* Updating and completing manpages of act and dnaplotter
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