Your message dated Fri, 31 Jul 2020 17:50:24 +0000 with message-id <[email protected]> and subject line Bug#966417: fixed in vg 1.25.0+ds-3 has caused the Debian Bug report #966417, regarding vg: FTBFS in sid, with new elfutils to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 966417: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=966417 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Source: vg Version: 1.25.0+ds-2 Severity: serious Hello, looks like elfutils dropped one library used by vg: # We do not provide a libebl anymore, use libdw instead. rm -f debian/tmp/usr/include/elfutils/libebl.h causing now FTBFS in sid: . ./source_me.sh && g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -I/usr/include/fastahack -I/<<BUILDDIR>>/vg-1.25.0+ds/include -I. -I/<<BUILDDIR>>/vg-1.25.0+ds/src -I/<<BUILDDIR>>/vg-1.25.0+ds/src/unittest -I/<<BUILDDIR>>/vg-1.25.0+ds/src/subcommand -I/<<BUILDDIR>>/vg-1.25.0+ds/include/dynamic -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/smithwaterman -I/usr/include/vcflib -I/usr/include/smithwaterman -I/usr/include/fastahack -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -std=c++14 -ggdb -g -MMD -MP -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/vg-1.25.0+ds=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -o test/build_graph test/build_graph.cpp -lvg -L/<<BUILDDIR>>/vg-1.25.0+ds/lib /<<BUILDDIR>>/vg-1.25.0+ds/lib/libvgio.a -lz -lgssw -lssw -lprotobuf -lsublinearLS -ldeflate -lpthread -ljansson -lncurses -lgcsa2 -lgbwtgraph -lgbwt -ldivsufsort -ldivsufsort64 -lraptor2 -lpinchesandcacti -l3edgeconnected -lsonlib -lfml -llz4 -lstructures -lvw -lboost_program_options -lallreduce -lbdsg -lxg -lsdsl -lhandlegraph -lfastahack -lsmithwaterman -ldisorder -lvcflib -lsmithwaterman -ldisorder -lfastahack -lhts -ltabixpp -lcairo -ljansson -latomic -rdynamic -ldw -lelf -lebl -ldl -llzma -lrocksdb -lbz2 -ljemalloc /usr/bin/ld: cannot find -lebl I don't know if this patch is enough to make it build correctly, it is still building here diff -Nru vg-1.25.0+ds/debian/changelog vg-1.25.0+ds/debian/changelog --- vg-1.25.0+ds/debian/changelog 2020-07-14 15:15:28.000000000 +0200 +++ vg-1.25.0+ds/debian/changelog 2020-07-28 12:11:33.000000000 +0200 @@ -1,3 +1,9 @@ +vg (1.25.0+ds-2.1) unstable; urgency=medium + + * Fix build by not linking anymore libebl.a (Closes: #-1) + + -- Gianfranco Costamagna <[email protected]> Tue, 28 Jul 2020 12:11:33 +0200 + vg (1.25.0+ds-2) unstable; urgency=medium * Restrict architectures to build for. Closes: #964039. diff -Nru vg-1.25.0+ds/debian/patches/use_packaged_elfutils vg-1.25.0+ds/debian/patches/use_packaged_elfutils --- vg-1.25.0+ds/debian/patches/use_packaged_elfutils 2020-02-03 13:26:00.000000000 +0100 +++ vg-1.25.0+ds/debian/patches/use_packaged_elfutils 2020-07-28 12:11:25.000000000 +0200 @@ -7,7 +7,7 @@ # We want to link against the elfutils libraries - LD_LIB_FLAGS += -ldwfl -ldw -ldwelf -lelf -lebl -+ LD_LIB_FLAGS += -ldw -lelf -lebl ++ LD_LIB_FLAGS += -ldw -lelf # We get OpenMP the normal way, using whatever the compiler knows about CXXFLAGS += -fopenmp
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--- Begin Message ---Source: vg Source-Version: 1.25.0+ds-3 Done: [email protected] (Michael R. Crusoe) We believe that the bug you reported is fixed in the latest version of vg, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Michael R. Crusoe <[email protected]> (supplier of updated vg package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Fri, 31 Jul 2020 15:09:46 +0200 Source: vg Architecture: source Version: 1.25.0+ds-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Michael R. Crusoe <[email protected]> Closes: 966417 Changes: vg (1.25.0+ds-3) unstable; urgency=medium . [ Gianfranco Costamagna ] * Fix build by not linking anymore libebl.a (Closes: #966417) Checksums-Sha1: 51fd02ac0d134aed73bf23c72c72858a07fb8401 2952 vg_1.25.0+ds-3.dsc 30545f21ae451d8858c383c7ea9df00cedc340ce 41860 vg_1.25.0+ds-3.debian.tar.xz 896abc5c5d539df757aac0adc887e8131435936d 10628 vg_1.25.0+ds-3_source.buildinfo Checksums-Sha256: ffa004e2ccdb34ede440d082dbb30eaeca172f59d6cffe8c33208f3f1066c765 2952 vg_1.25.0+ds-3.dsc 8e17527aa096168e3762ad089b60c03a6acbe1df13912b7635ba13b6e1c2962c 41860 vg_1.25.0+ds-3.debian.tar.xz 707d53c427b666453a26b2d151e553075d654d21de02fbdd326cdaa745f32178 10628 vg_1.25.0+ds-3_source.buildinfo Files: 9834fa81d155f7cc132d2d02fb4c116b 2952 science optional vg_1.25.0+ds-3.dsc e7d051acc9714b60d798c1b65aec334a 41860 science optional vg_1.25.0+ds-3.debian.tar.xz 65a2d4005632dfd96341644e0f12d731 10628 science optional vg_1.25.0+ds-3_source.buildinfo -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAl8kVbMACgkQPCZ2P2xn 5uJlGQ//TsAPLWPrDbEunyhK/3V+oJwf5Ar2w0DZOxTTthTyU+gkAuE9ahyb/zdW givu3q15qm00plcKNHGwbFg67Q4c0WTQnOYn+YuOpCj9C8W6fL0lFuOM0yGPkqJQ E+plodLp015ptbdXK4HSeh+KLFeU/ljmOUfCV+12akEUHbXTec0fU+H3zPmP0hnc Gmf+bKOuonjVdg1zjfoQNSY4HUtcxhRI7KoRduz1SY6otF5e38AFFgdOI9hx5X8R o1EHzoJoECIc3q+cWbpihUgH4ymz/JzvBzA1n2QEc7mIeOoab2lmhyCXV8CnPjBk McfUxRkneJqCm/uOAkhLL+ps/SjHUiXNsGmICBxAwBMIfZTUcYTgkra+OhaRX1td 33BoIhDSmCZNTisdYdrZV7QT2EyDU3v+u+koUTW63jAv0EpvFiHtRCY4z6OJkDUK iQXt9h0pR4c0un80B4jpPKTd479Y/OJnhfAZQSnuwQ9BYErLoTDNhvYSUvijQ5gJ zRJs9kK8u2JUKfFUpJAZsG9S38VM8rBWqMxAx4lvhqTXEZqzFLfY99xy24teaki5 sU01H9mhBloTrHrCJmRqZz03E0wQ6A1Vt8crEUN32z2uUhd9zBhRk+kxQCEOxxla D1EZFzrgSZmjLSv1Ckos5uT1EeNaFsWNtpOBDOdb9WxJTSIengo= =LEnB -----END PGP SIGNATURE-----
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