Your message dated Thu, 23 Jul 2020 15:34:24 +0000 with message-id <e1jydem-000gpf...@fasolo.debian.org> and subject line Bug#957476: fixed in libsmithwaterman 0.0+git20160702.2610e25-9 has caused the Debian Bug report #957476, regarding libsmithwaterman: ftbfs with GCC-10 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 957476: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=957476 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:libsmithwaterman Version: 0.0+git20160702.2610e25-7 Severity: normal Tags: sid bullseye User: debian-...@lists.debian.org Usertags: ftbfs-gcc-10 Please keep this issue open in the bug tracker for the package it was filed for. If a fix in another package is required, please file a bug for the other package (or clone), and add a block in this package. Please keep the issue open until the package can be built in a follow-up test rebuild. The package fails to build in a test rebuild on at least amd64 with gcc-10/g++-10, but succeeds to build with gcc-9/g++-9. The severity of this report will be raised before the bullseye release, so nothing has to be done for the buster release. The full build log can be found at: http://people.debian.org/~doko/logs/gcc10-20200225/libsmithwaterman_0.0+git20160702.2610e25-7_unstable_gcc10.log The last lines of the build log are at the end of this report. To build with GCC 10, either set CC=gcc-10 CXX=g++-10 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. apt-get -t=experimental install g++ Common build failures are new warnings resulting in build failures with -Werror turned on, or new/dropped symbols in Debian symbols files. For other C/C++ related build failures see the porting guide at http://gcc.gnu.org/gcc-10/porting_to.html [...] install -d -m 755 debian/libsmithwaterman-dev/usr/include mv debian/tmp/usr/include/smithwaterman debian/libsmithwaterman-dev/usr/include install -d -m 755 debian/libsmithwaterman-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libsmithwaterman-dev/usr/lib/x86_64-linux-gnu/pkgconfig make[1]: Leaving directory '/<<PKGBUILDDIR>>' dh_installdocs -O--no-parallel dh_installchangelogs -O--no-parallel dh_installman -O--no-parallel dh_installinit -O--no-parallel dh_perl -O--no-parallel dh_link -O--no-parallel dh_strip_nondeterminism -O--no-parallel dh_compress -O--no-parallel dh_fixperms -O--no-parallel dh_missing -O--no-parallel dh_strip -O--no-parallel dh_makeshlibs -O--no-parallel dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libsmithwaterman0/DEBIAN/symbols doesn't match completely debian/libsmithwaterman0.symbols --- debian/libsmithwaterman0.symbols (libsmithwaterman0_0.0+git20160702.2610e25-7_amd64) +++ dpkg-gensymbolsv6JZfx 2020-02-26 12:53:02.790519615 +0000 @@ -48,12 +48,16 @@ _ZN20CBandedSmithWatermanD1Ev@Base 0.0+git20160702.2610e25 _ZN20CBandedSmithWatermanD2Ev@Base 0.0+git20160702.2610e25 (optional)_ZNKSt5ctypeIcE8do_widenEc@Base 0.0+git20160702.2610e25 + _ZNSt12_Vector_baseIfSaIfEED1Ev@Base 0.0+git20160702.2610e25-7 + _ZNSt12_Vector_baseIfSaIfEED2Ev@Base 0.0+git20160702.2610e25-7 + _ZNSt15_Rb_tree_headerC1EOS_@Base 0.0+git20160702.2610e25-7 + _ZNSt15_Rb_tree_headerC2EOS_@Base 0.0+git20160702.2610e25-7 (optional)_ZNSt6vectorI11IndelAlleleSaIS0_EE12emplace_backIJS0_EEEvDpOT_@Base 0.0+git20160702.2610e25 _ZNSt6vectorI11IndelAlleleSaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 0.0+git20160702.2610e25 (optional)_ZNSt6vectorI11IndelAlleleSaIS0_EE17_M_realloc_insertIJS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 0.0+git20160702.2610e25 _ZNSt6vectorI11IndelAlleleSaIS0_EED1Ev@Base 0.0+git20160702.2610e25 _ZNSt6vectorI11IndelAlleleSaIS0_EED2Ev@Base 0.0+git20160702.2610e25 - 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--- Begin Message ---Source: libsmithwaterman Source-Version: 0.0+git20160702.2610e25-9 Done: Andreas Tille <ti...@debian.org> We believe that the bug you reported is fixed in the latest version of libsmithwaterman, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 957...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated libsmithwaterman package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Thu, 23 Jul 2020 16:00:43 +0200 Source: libsmithwaterman Architecture: source Version: 0.0+git20160702.2610e25-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Closes: 957476 Changes: libsmithwaterman (0.0+git20160702.2610e25-9) unstable; urgency=medium . * Update symbols for gcc-10 Closes: #957476 * debhelper-compat 13 (routine-update) * Remove libsmithwaterman.la from build to make dh_missing happy Checksums-Sha1: 23092a98f0958e960e36b4302e57d2148b08ccda 2333 libsmithwaterman_0.0+git20160702.2610e25-9.dsc 2a0d1e75c092603f9313204d3784f239da17173f 7056 libsmithwaterman_0.0+git20160702.2610e25-9.debian.tar.xz 9127ecf6014c985c4e48d7002a48554a21740207 7576 libsmithwaterman_0.0+git20160702.2610e25-9_amd64.buildinfo Checksums-Sha256: 90e775ca3b17def9f78da8a7da3ef5802e9948195364b37d28a8fb71b244cf91 2333 libsmithwaterman_0.0+git20160702.2610e25-9.dsc 22ee658f9ea9bb465fe66e024c44919986d9a91900ce0bb461729da8e0c8170b 7056 libsmithwaterman_0.0+git20160702.2610e25-9.debian.tar.xz 2d277a909acf68c361ed790a5c2bc071f97020fe5f240f862dfa2c691c794451 7576 libsmithwaterman_0.0+git20160702.2610e25-9_amd64.buildinfo Files: 04fba83cbf20fb594300ea1251a2346b 2333 science optional libsmithwaterman_0.0+git20160702.2610e25-9.dsc fe8ddb8c95d3cbf0138feb7b7f250f62 7056 science optional libsmithwaterman_0.0+git20160702.2610e25-9.debian.tar.xz 1dc4845f67ab691df1b45eb44708d9cd 7576 science optional libsmithwaterman_0.0+git20160702.2610e25-9_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl8ZqG4RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFHJBAAg137v91E8S9iFGzSQU2fPlBajWY1ilfU tLL+QOPTAp57W3lEo7PDYckytKWbqEYkpqCSHK1c4GeKt+bbDKIefKn+ugTZ7tpE HvhMSCrp9F3F0MrJpZNBlP/1ikXrzh9U6JaIixcdcH9b81wRhr82tQziTBRwgGFk To+ohuhAbRVlE+cBNUzu46JO8ksmJK9aukNPs4l1S8J0BoVaTxxe7mc6K7pavln4 MaxQJnGsyCO+sRA3CnpjVTuO3K8MSFwDRdp8uZXAXxYNy2ynoMXVcKKFJMZnQJqm 2PzB7qFiQ5cBnKwhhjMBS5xv7BWgTwgHWrYlIkkojo6B+8v/zjJlmqko+3WJFDNO Eny+jGrNrBJO2+QCuL2GuCRJvXd0RpWNpbRCXXx3kGI2UfYMSsvmI9rBuEmb+8Rk 6X/CXBfFmiV/UhpMQMgh1Qbit0JiIlEXy/JT7ZqQ1aeNOLEiTRKs6svnJBslNX2z 0i+ddO7z1GNZkSvbJOl4fOOUsLp+G/3GYiYZDjSYuB0RjO2a54BLvn7P3UJBJdbc OsaQgqj3gFtBylboOIK3bhBkl/F+4U5yRAHiTq4JAegiG0IQM/AJT45wtacQla4r E/GdYmzZdWbTXqcEA8kS3orDoEufzuY//ciEjK119LcnKUGJqZLoSF7t7dm8Wxai xR20OXoTcRI= =W/E/ -----END PGP SIGNATURE-----
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