Your message dated Mon, 15 Jun 2020 16:33:28 +0000 with message-id <e1jks36-0005bg...@fasolo.debian.org> and subject line Bug#962553: fixed in gff2aplot 2.0-13 has caused the Debian Bug report #962553, regarding gffread: autopkgtest needs update for new version of gff2aplot: warning on stderr to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 962553: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=962553 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: gffread Version: 0.11.8-1 Severity: serious X-Debbugs-CC: debian...@lists.debian.org, gff2ap...@packages.debian.org Tags: sid bullseye User: debian...@lists.debian.org Usertags: needs-update Control: affects -1 src:gff2aplot Dear maintainer(s), With a recent upload of gff2aplot the autopkgtest of gffread fails in testing when that autopkgtest is run with the binary packages of gff2aplot from unstable. It passes when run with only packages from testing. In tabular form: pass fail gff2aplot from testing 2.0-12 gffread from testing 0.11.8-1 all others from testing from testing I copied some of the output at the bottom of this report. Currently this regression is blocking the migration of gff2aplot to testing [1]. Of course, gff2aplot shouldn't just break your autopkgtest (or even worse, your package), but it seems to me that the change in gff2aplot was intended and your package needs to update to the new situation. If you can't fix the issue which triggers the warning, you can add the allow-stderr restriction for your test. If this is a real problem in your package (and not only in your autopkgtest), the right binary package(s) from gff2aplot should really add a versioned Breaks on the unfixed version of (one of your) package(s). Note: the Breaks is nice even if the issue is only in the autopkgtest as it helps the migration software to figure out the right versions to combine in the tests. More information about this bug and the reason for filing it can be found on https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation Paul [1] https://qa.debian.org/excuses.php?package=gff2aplot https://ci.debian.net/data/autopkgtest/testing/amd64/g/gffread/5834059/log.gz autopkgtest [01:19:28]: test run-tests: - - - - - - - - - - stderr - - - - - - - - - - Warning: invalid start coordinate at line: #name1:name2 source feature beg1:beg2 end1:end2 score strand frame group comment Warning: invalid start coordinate at line: #name1:name2 source feature beg1:beg2 end1:end2 score strand frame group comment autopkgtest [01:19:28]: @@@@@@@@@@@@@@@@@@@@ summary run-tests FAIL stderr: Warning: invalid start coordinate at line:
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--- Begin Message ---Source: gff2aplot Source-Version: 2.0-13 Done: Pranav Ballaney <ballaneypra...@gmail.com> We believe that the bug you reported is fixed in the latest version of gff2aplot, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 962...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Pranav Ballaney <ballaneypra...@gmail.com> (supplier of updated gff2aplot package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sun, 14 Jun 2020 11:51:26 +0530 Source: gff2aplot Architecture: source Version: 2.0-13 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Pranav Ballaney <ballaneypra...@gmail.com> Closes: 962553 Changes: gff2aplot (2.0-13) unstable; urgency=medium . * Team upload. * Replace tabs in gff files with spaces (Closes: #962553) Checksums-Sha1: 0ef375e0bd90ec18e837e22e754cfc26bcdc5cc5 2044 gff2aplot_2.0-13.dsc 9f40fb57f7fb102a6b9c00910a82f447b38ceccc 20632 gff2aplot_2.0-13.debian.tar.xz e56dcafd6a3a2d8ea9a5aa9ddbcf7284fed4d9f6 5568 gff2aplot_2.0-13_amd64.buildinfo Checksums-Sha256: a723d6e939960f383b62aa067460f8f593924f4e99556daa897c4d931b6182fd 2044 gff2aplot_2.0-13.dsc ee8b3169ed88156414808ad77e08537820394414bc61ebdb9f94f122d02b72e3 20632 gff2aplot_2.0-13.debian.tar.xz 9d7f30e1983781c452f02d855199f31fe4fef89e9e0652d44a390269179cf442 5568 gff2aplot_2.0-13_amd64.buildinfo Files: a321d80ab6bfa5f63cf3c5ac2236419e 2044 science optional gff2aplot_2.0-13.dsc b2533d35f5cbce5821169a0b28aa0517 20632 science optional gff2aplot_2.0-13.debian.tar.xz 3c34ac550341fbfbf985292e7e0b2640 5568 science optional gff2aplot_2.0-13_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl7noGURHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEtzQ/9HsCrvHOBK3bdBaOmUNs4QiEs6cJwKLNW PN296CDO1edvc/Bdq1u5dAtp+Bsd9pL1/eboRAWprcufhpPFNZ0m5o3VnrQz4JvO /cGwcbJWoCGzJhcC8uJKocDBElJhdbcl8bJmgUMmFzgTR5+jOWRDCUxOWSyDa583 bqJFDEz6VHfY1KH12HVxwls31q5QMxAJCyQT3vFNntGM7/xwJT5xP4KqE0kcE7n8 OkNwTtShfKV+EtQK2br9t1UPcXPz5Qn+Xhv+SWGu0pj6b7/ZBRyhZXtFX3TbiCF6 QwE2Jl6AEQFZPSPVT4lFyA2mWIe3w2g65kEVZFjvygjir0BciBJSeOZ0p8BZzxl/ f9ydeY5WlnUYZdBvzf0/bRiBawftbQzcTOv5sAU9ADHh89+f2dKhsX/DpI9e45Gw iMhwEeG7BL3itcw9F3hb76dBQRQEha+iSd7QU9vm+GZq868X73lMD3ItKmbExeDp xJiag4/P9FAiaTZFL5JYKr7GZJrsetDuuY5CZYG+vuJ7/dmp1+qPcvzxcyy6gMtE CpSE+eWDfKiNNuLdJOXB3cuy20MoSDdTzkCEfz2JBugmOv9x2fjOp8xN/lvVOJRW /oiCN1Kq5AV2QxCGyqdldJPlK/rnDM3Dsi5r8xxpnwsPJ8qBRl/xzRsOXt2K+7u0 2JGKiIc5UaY= =Qvaf -----END PGP SIGNATURE-----
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