Your message dated Wed, 10 Jun 2020 06:18:36 +0000
with message-id <e1jiu4k-0006tm...@fasolo.debian.org>
and subject line Bug#962497: fixed in r-cran-data.table 1.12.8+dfsg-2
has caused the Debian Bug report #962497,
regarding r-base breaks r-cran-data.table autopkgtest: 'origin' must be supplied
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
962497: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=962497
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: r-base, r-cran-data.table
Control: found -1 r-base/4.0.1-1
Control: found -1 r-cran-data.table/1.12.8+dfsg-1
Severity: serious
Tags: sid bullseye
X-Debbugs-CC: debian...@lists.debian.org
User: debian...@lists.debian.org
Usertags: breaks needs-update
Dear maintainer(s),
With a recent upload of r-base the autopkgtest of r-cran-data.table
fails in testing when that autopkgtest is run with the binary packages
of r-base from unstable. It passes when run with only packages from
testing. In tabular form:
pass fail
r-base from testing 4.0.1-1
r-cran-data.table from testing 1.12.8+dfsg-1
versioned deps [0] from testing from unstable
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration of r-base to testing
[1]. Due to the nature of this issue, I filed this bug report against
both packages. Can you please investigate the situation and reassign the
bug to the right package?
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[0] You can see what packages were added from the second line of the log
file quoted below. The migration software adds source package from
unstable to the list if they are needed to install packages from
r-base/4.0.1-1. I.e. due to versioned dependencies or breaks/conflicts.
[1] https://qa.debian.org/excuses.php?package=r-base
https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-cran-data.table/5803495/log.gz
BEGIN TEST main.R
R version 4.0.1 (2020-06-06) -- "See Things Now"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> require(data.table)
Loading required package: data.table
>
> test.data.table() # runs the main test suite of 5,000+ tests in
/inst/tests/tests.Rraw
getDTthreads(verbose=TRUE):
omp_get_num_procs() 2
R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
R_DATATABLE_NUM_THREADS unset
omp_get_thread_limit() 2147483647
omp_get_max_threads() 2
OMP_THREAD_LIMIT unset
OMP_NUM_THREADS unset
RestoreAfterFork true
data.table is using 1 threads. See ?setDTthreads.
test.data.table() running:
/usr/lib/R/site-library/data.table/tests/tests.Rraw.bz2
**** Suggested package bit64 is not installed. Tests using it will be
skipped.
**** Suggested package xts is not installed. Tests using it will be skipped.
**** Suggested package nanotime is not installed. Tests using it will be
skipped.
**** Suggested package R.utils is not installed. Tests using it will be
skipped.
**** Suggested package yaml is not installed. Tests using it will be
skipped.
Test 1390.3 produced 1 errors but expected 0
Expected:
Observed: 'origin' must be supplied
Test 1390.4 produced 1 errors but expected 0
Expected:
Observed: 'origin' must be supplied
Test 1390.5 produced 1 errors but expected 0
Expected:
Observed: 'origin' must be supplied
Test 1760 not run because this session either has no OpenMP or has been
limited to one thread (e.g. under UBSAN and ASAN)
10 longest running tests took 15s (38% of 40s)
ID time nTest
1: 1888 2.860 9
2: 1848 1.766 1
3: 1874 1.753 5
4: 1438 1.564 354
5: 1912 1.530 2
6: 1223 1.186 728
7: 1648 1.171 45
8: 1650 1.158 45
9: 1652 1.143 45
10: 1437 1.116 36
Error in test.data.table() :
3 errors out of 7311 in 40.4s elapsed (38.2s cpu) on Sun Jun 7
09:33:45 2020. [endian==little, sizeof(long double)==16,
sizeof(pointer)==8, TZ=Etc/UTC, locale='C', l10n_info()='MBCS=FALSE;
UTF-8=FALSE; Latin-1=FALSE', getDTthreads()='omp_get_num_procs()==2;
R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50);
R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==2147483647;
omp_get_max_threads()==2; OMP_THREAD_LIMIT==unset;
OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 1
threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test
numbers: 1390.3, 1390.4, 1390.5.
In addition: Warning messages:
1: In parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) :
invalid input found on input connection
'/usr/lib/R/site-library/data.table/tests/tests.Rraw.bz2'
2: In parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) :
invalid input found on input connection
'/usr/lib/R/site-library/data.table/tests/tests.Rraw.bz2'
Execution halted
autopkgtest [09:33:45]: test run-unit-test: -----------------------]
signature.asc
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: r-cran-data.table
Source-Version: 1.12.8+dfsg-2
Done: =?utf-8?q?Dylan_A=C3=AFssi?= <dai...@debian.org>
We believe that the bug you reported is fixed in the latest version of
r-cran-data.table, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 962...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Dylan Aïssi <dai...@debian.org> (supplier of updated r-cran-data.table package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 10 Jun 2020 07:59:10 +0200
Source: r-cran-data.table
Architecture: source
Version: 1.12.8+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <r-pkg-t...@alioth-lists.debian.net>
Changed-By: Dylan Aïssi <dai...@debian.org>
Closes: 962497
Changes:
r-cran-data.table (1.12.8+dfsg-2) unstable; urgency=medium
.
* Team upload.
* Standards-Version: 4.5.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Add upstream patch to fix foverlaps failures due to c.POSIXct
change (Closes: #962497) Thanks Dirk for your investigation.
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