Source: primer3
Version: 2.4.0-2
Severity: serious
Hello, can you please apply the same on autopkgtests? now autopkgtests failures
are considered RC buggy
something like this might work:
--- primer3-2.4.0/debian/changelog 2018-05-28 15:44:30.000000000 +0200
+++ primer3-2.4.0/debian/changelog 2020-06-04 11:47:04.000000000 +0200
@@ -1,3 +1,9 @@
+primer3 (2.4.0-2.1) unstable; urgency=medium
+
+ * Also skip autopkgtests that fail on big endian (see: 890993,) Closes: #-1
+
+ -- Gianfranco Costamagna <locutusofb...@debian.org> Thu, 04 Jun 2020
11:47:04 +0200
+
primer3 (2.4.0-2) unstable; urgency=medium
[ Liubov Chuprikova ]
diff -Nru primer3-2.4.0/debian/tests/run-unit-test
primer3-2.4.0/debian/tests/run-unit-test
--- primer3-2.4.0/debian/tests/run-unit-test 2018-05-28 15:44:30.000000000
+0200
+++ primer3-2.4.0/debian/tests/run-unit-test 2020-06-04 11:47:04.000000000
+0200
@@ -8,6 +8,13 @@
AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
fi
+BUILDARCH=$(dpkg-architecture -q DEB_BUILD_ARCH_ENDIAN)
+
+P3CORE_FAILED_TESTS='primer_masker' \
+ 'primer_masker_formatted'
+
+FAILED_TESTS=testmasker
+
cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP
cd $AUTOPKGTEST_TMP
@@ -19,6 +26,16 @@
ln -s /usr/bin/ntthal ./src/ntthal
ln -s /usr/bin/oligotm ./src/oligotm
+if [ $BUILDARCH = big ]; then
+ cp -a test/p3test.pl test/p3test.pl~
+ cp -a test/Makefile test/Makefile~
+ # exclude tests known to fail on big endian
+ # See README.source for further explanation.
+ for tst in $(P3CORE_FAILED_TESTS) ; do sed -i "/$${tst}/d" test/p3test.pl ;
done
+ sed -i "0,/$(FAILED_TESTS)/s///" test/Makefile
+ sed -i "/$(FAILED_TESTS)/,/endif/d" test/Makefile
+fi
+
cd test/;
echo "testcmdline:"
@@ -36,4 +53,12 @@
echo "testtm:"
perl oligotm_test.pl ${TESTOPTS}
+cd ..
+
+if [ $BUILDARCH = big ]; then
+ # restore original test file
+ mv test/p3test.pl~ test/p3test.pl
+ mv test/Makefile~ test/Makefile
+fi
+
echo "PASS"
On Tue, 29 May 2018 17:36:48 +0000 Liubov Chuprikova <chuprikov...@gmail.com>
wrote:
> Source: primer3
> Source-Version: 2.4.0-2
>
> We believe that the bug you reported is fixed in the latest version of
> primer3, which is due to be installed in the Debian FTP archive.
>
> A summary of the changes between this version and the previous one is
> attached.
>
> Thank you for reporting the bug, which will now be closed. If you
> have further comments please address them to 890...@bugs.debian.org,
> and the maintainer will reopen the bug report if appropriate.
>
> Debian distribution maintenance software
> pp.
> Liubov Chuprikova <chuprikov...@gmail.com> (supplier of updated primer3
> package)
>
> (This message was generated automatically at their request; if you
> believe that there is a problem with it please contact the archive
> administrators by mailing ftpmas...@ftp-master.debian.org)
>
>
> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA512
>
> Format: 1.8
> Date: Mon, 28 May 2018 13:44:30 +0000
> Source: primer3
> Binary: primer3 primer3-examples
> Architecture: source
> Version: 2.4.0-2
> Distribution: unstable
> Urgency: medium
> Maintainer: Debian Med Packaging Team
> <debian-med-packag...@lists.alioth.debian.org>
> Changed-By: Liubov Chuprikova <chuprikov...@gmail.com>
> Description:
> primer3 - tool to design flanking oligo nucleotides for DNA amplification
> primer3-examples - tool to design flanking oligo nucleotides for DNA
> amplification (
> Closes: 890993
> Changes:
> primer3 (2.4.0-2) unstable; urgency=medium
> .
> [ Liubov Chuprikova ]
> * Team upload.
> * Skip tests that fail on big endian
> Closes: #890993
> * Added d/README.source with explanation why some tests are skipped
> * debian/patches/p3test_fix_exit_status.patch: Fix test to show correct
> exit
> status
> .
> [ Andreas Tille ]
> * Point Vcs fields to salsa.debian.org
> * Standards-Version: 4.1.4
> Checksums-Sha1:
> ed7288049fca41a312d5d528d3e57e0b51be9bdc 2117 primer3_2.4.0-2.dsc
> 9d7f7874ef42796bd45181a610ad4d2d9193ef02 12060 primer3_2.4.0-2.debian.tar.xz
> 60fe57fc774ab8b537785d4c6d07e54647aabd70 5964 primer3_2.4.0-2_amd64.buildinfo
> Checksums-Sha256:
> 541ec07c9092995dd359620326630c45135321868ee2c2350ef61e1d4d67628d 2117
> primer3_2.4.0-2.dsc
> 96247e4223393e0056a8886209b1bb37abfa7dc7fb00eca4e3e695daf62dd71e 12060
> primer3_2.4.0-2.debian.tar.xz
