Control: tags -1 help
Hi,
currently bioperl-run fails. I think the issue is:
> # Failed test 'Code tested only on kalign versions >= 2'
> # at t/Kalign.t line 23.
> # got: ''
> # expected: '1'
> [2020-03-22 03:18:02] : ERROR : Input alignment format could not be
> detected. (rwalign.c line 314)
> [2020-03-22 03:18:02] : ERROR : Function "detect_alignment_format(b,
> &type)" failed. (rwalign.c line 187)
> [2020-03-22 03:18:02] : ERROR : Function "tmp_msa =
> read_input(param->infile[i],tmp_msa)" failed. (run_kalign.c line 383)
> [2020-03-22 03:18:02] : ERROR : Function "run_kalign(param)" failed.
> (run_kalign.c line 353)
>
> --------------------- WARNING ---------------------
> MSG: Kalign call crashed: 256 [command /usr/bin/kalign -in t/data/cysprot.fa
> -out /tmp/ilV8fEWBHj/nJrv_GQaDU]
but please double check. Could someone have a look please?
Kind regards
Andreas.
----- Forwarded message from Debian testing autoremoval watch
<[email protected]> -----
Date: Mon, 30 Mar 2020 04:39:17 +0000
From: Debian testing autoremoval watch <[email protected]>
To: [email protected]
Subject: bioperl-run is marked for autoremoval from testing
bioperl-run 1.7.3-3 is marked for autoremoval from testing on 2020-05-05
It is affected by these RC bugs:
954511: bioperl-run: FTBFS: dh_auto_test: error: perl Build test --verbose 1
returned exit code 255
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