--- Begin Message ---
Source: libstatgen
Version: 1.0.14-5
Severity: serious
Justification: FTBFS on amd64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20200222 ftbfs-bullseye
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> mkdir -p debian/libstatgen-dev/usr/include/libStatGen/
> cp -L include/* debian/libstatgen-dev/usr/include/libStatGen/
> ln -s libStatGen.so.0 libStatGen.so
> d-shlibmove --commit \
> --multiarch \
> --devunversioned \
> --exclude-a \
> libStatGen.so
> Library package automatic movement utility
> set -e
> install -d -m 755 debian/libstatgen-dev/usr/lib/x86_64-linux-gnu
> install -d -m 755 debian/libstatgen0/usr/lib/x86_64-linux-gnu
> mv ./libStatGen.la debian/libstatgen-dev/usr/lib/x86_64-linux-gnu || true
> mv ./libStatGen.so debian/libstatgen-dev/usr/lib/x86_64-linux-gnu
> mv /<<PKGBUILDDIR>>/libStatGen.so.0
> debian/libstatgen0/usr/lib/x86_64-linux-gnu
> PKGDEV=libstatgen-dev
> PKGSHL=libstatgen0
> mv: cannot stat './libStatGen.la': No such file or directory
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_installdocs
> dh_installchangelogs
> dh_perl
> dh_link
> dh_strip_nondeterminism
> dh_compress
> dh_fixperms
> dh_missing
> dh_strip
> dh_makeshlibs
> dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see
> diff output below
> dpkg-gensymbols: error: some symbols or patterns disappeared in the symbols
> file: see diff output below
> dpkg-gensymbols: warning: debian/libstatgen0/DEBIAN/symbols doesn't match
> completely debian/libstatgen0.symbols
> --- debian/libstatgen0.symbols (libstatgen0_1.0.14-5_amd64)
> +++ dpkg-gensymbolsdde9Ud 2020-02-23 02:40:44.569405938 +0000
> @@ -1628,8 +1628,13 @@
> (c++)"VectorFunc::VectorFunc()@Base" 1.0.14
> (c++)"VectorFunc::VectorFunc(double (*)(Vector&))@Base" 1.0.14
> (c++)"VectorFunc::~VectorFunc()@Base" 1.0.14
> + _ZN11MiniDeflate14OutputLiteralsERPhiS1_RiP8_IO_FILE@Base 1.0.14-5
> +
> _ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_SaIS5_ENSt8__detail9_IdentityESt8equal_toIS5_ESt4hashIS5_ENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb1ELb1ELb1EEEE9_M_rehashEmRKm@Base
> 1.0.14-5
> +
> _ZNSt6vectorIcSaIcEE17_M_realloc_insertIJcEEEvN9__gnu_cxx17__normal_iteratorIPcS1_EEDpOT_@Base
> 1.0.14-5
>
> _ZNSt6vectorIfSaIfEE17_M_realloc_insertIJRKfEEEvN9__gnu_cxx17__normal_iteratorIPfS1_EEDpOT_@Base
> 1.0.14
>
> _ZNSt6vectorIfSaIfEE17_M_realloc_insertIJfEEEvN9__gnu_cxx17__normal_iteratorIPfS1_EEDpOT_@Base
> 1.0.14
> +
> _ZNSt6vectorIhSaIhEE17_M_realloc_insertIJRKhEEEvN9__gnu_cxx17__normal_iteratorIPhS1_EEDpOT_@Base
> 1.0.14-5
> +
> _ZNSt6vectorIhSaIhEE17_M_realloc_insertIJhEEEvN9__gnu_cxx17__normal_iteratorIPhS1_EEDpOT_@Base
> 1.0.14-5
>
> _ZNSt6vectorIiSaIiEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base
> 1.0.14
> bQualityConvertor@Base 1.0.14
> (c++)"baseQualityConvertor::baseQualityConvertor()@Base" 1.0.14
> @@ -1711,7 +1716,7 @@
> (c++)"std::_Bvector_base<std::allocator<bool> >::_M_deallocate()@Base"
> 1.0.14
> (c++)"std::_Deque_base<SamRecord*, std::allocator<SamRecord*>
> >::_M_initialize_map(unsigned long)@Base" 1.0.14
> (c++)"std::_Hashtable<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >,
> std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>
> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>,
> std::allocator<char> > >, std::__detail::_Identity,
> std::equal_to<std::__cxx11::basic_string<char, std::char_traits<char>,
> std::allocator<char> > >, std::hash<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> > >,
> std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash,
> std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true,
> true, true> >::_M_find_before_node(unsigned long,
> std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>
> > const&, unsigned long) const@Base" 1.0.14
> - (c++)"std::_Hashtable<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >,
> std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>
> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>,
> std::allocator<char> > >, std::__detail::_Identity,
> std::equal_to<std::__cxx11::basic_string<char, std::char_traits<char>,
> std::allocator<char> > >, std::hash<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> > >,
> std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash,
> std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true,
> true, true> >::_M_insert_unique_node(unsigned long, unsigned long,
> std::__detail::_Hash_node<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, true>*, unsigned long)@Base"
> 1.0.14
> +#MISSING: 1.0.14-5# (c++)"std::_Hashtable<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >,
> std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>
> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>,
> std::allocator<char> > >, std::__detail::_Identity,
> std::equal_to<std::__cxx11::basic_string<char, std::char_traits<char>,
> std::allocator<char> > >, std::hash<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> > >,
> std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash,
> std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true,
> true, true> >::_M_insert_unique_node(unsigned long, unsigned long,
> std::__detail::_Hash_node<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >, true>*, unsigned long)@Base"
> 1.0.14
> (c++)"std::_Hashtable<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >,
> std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>
> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>,
> std::allocator<char> > >, std::__detail::_Identity,
> std::equal_to<std::__cxx11::basic_string<char, std::char_traits<char>,
> std::allocator<char> > >, std::hash<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> > >,
> std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash,
> std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true,
> true, true> >::clear()@Base" 1.0.14
> (c++)"std::_Hashtable<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >,
> std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>
> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>,
> std::allocator<char> > >, std::__detail::_Identity,
> std::equal_to<std::__cxx11::basic_string<char, std::char_traits<char>,
> std::allocator<char> > >, std::hash<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> > >,
> std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash,
> std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true,
> true, true> >::find(std::__cxx11::basic_string<char, std::char_traits<char>,
> std::allocator<char> > const&)@Base" 1.0.14
> (c++)"std::_Hashtable<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> >,
> std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>
> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>,
> std::allocator<char> > >, std::__detail::_Identity,
> std::equal_to<std::__cxx11::basic_string<char, std::char_traits<char>,
> std::allocator<char> > >, std::hash<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> > >,
> std::__detail::_Mod_range_hashing, std::__detail::_Default_ranged_hash,
> std::__detail::_Prime_rehash_policy, std::__detail::_Hashtable_traits<true,
> true, true> >::~_Hashtable()@Base" 1.0.14
> dh_makeshlibs: error: failing due to earlier errors
> make: *** [debian/rules:11: binary] Error 25
The full build log is available from:
http://qa-logs.debian.net/2020/02/22/libstatgen_1.0.14-5_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
