Package: libpbdata-dev
Version: 5.3.3+dfsg-2
Severity: serious
Justification: Causes FTBFS
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Hi,
A tentative rebuild of pbdagcon failed with:
FORTIFY_SOURCE=2 -MMD -MP
-I/build/pbdagcon-WqBR9Y/pbdagcon-0.3+git20161121.0000000+ds/DAZZ_DB
-I/build/pbdagcon-WqBR9Y/pbdagcon-0.3+git20161121.0000000+ds/DALIGNER
-I/usr/include/pbseq/alignment -I/usr/include/pbseq/pbdata
-I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o
main.o main.cpp
In file included from /usr/include/pbseq/pbdata/DNASequence.hpp:17,
from SimpleAligner.hpp:5,
from main.cpp:24:
/usr/include/pbbam/BamRecord.h:19:10: fatal error: pbcopper/data/MappedRead.h:
No such file or directory
19 | #include <pbcopper/data/MappedRead.h>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
The header pbseq/pbdata/DNASequence.hpp is part of libpbdata-dev, and
pbcopper/data/MappedRead.h is part of libpbcopper-dev. Because the former
requires a header from the later, there should be a Depends relation
between those two packages.
Thanks,
_g.
- -- System Information:
Debian Release: buster/sid
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 5.4.0-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8),
LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
Versions of packages libpbdata-dev depends on:
pn libpbdata <none>
libpbdata-dev recommends no packages.
libpbdata-dev suggests no packages.
-----BEGIN PGP SIGNATURE-----
iQEzBAEBCgAdFiEEoJObzArDE05WtIyR7+hsbH/+z4MFAl4thnkACgkQ7+hsbH/+
z4O3BwgAhvxEmXCM7fQTFleSkcH94ic5I1Sk3jdPRytxJ2rMCnl9/D7/rDBpEBVS
ll+jOQNZi68E2WLt54QPwdw6PefnZdScfGp9bNFn5/kRKv5TZ2pWx3ixFx3H9V76
FuIAzuaQg5u1GmrDqF25F+q5f7sn+S48AshZI6VrxtRJBTRVou8McK08hLUS5EeW
e2S69q+253ukMXyspOu37jEaRw7ACKH+d1beFM8NYf/rbQSexB1bktpTDQKD4P+4
E4FNIxonEFZ+PNghEUQhfsNKtpEXMwiS/B1sKhY5kgdOZtp7AnQ+XePjLQRzVTxe
9wdfFb9eBceQskOKH8taVAwuWmxCxQ==
=68VW
-----END PGP SIGNATURE-----
